rfx7 (Gasterosteus aculeatus)
RFX

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02257 (RFX_DNA_binding) IPR003150 ENSGACG00000015838 T318259_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Rfx7
M00823_2.00 		Mus musculus
GTYRCYRNSB
VSNYRGYRAC		 PBM
Weirauch et al.(2013)
pTH3516 		0.760 0.873
Rfx7
M00187_2.00 		Mus musculus
BGTHDYYRNN
NNYRRHDACV		 PBM
Badis et al.(2009)
Rfxdc2_3516 		0.760 0.873
RFX7
M05729_2.00 		Homo sapiens
BGTTRCYRY
RYRGYAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_HT-SELEX 		0.760 0.873
RFX7
M05730_2.00 		Homo sapiens
BGTTGCYRB
VYRGCAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_Methyl-HT-SELEX 		0.760 0.873
RFX5
M03458_2.00 		Homo sapiens
BGTTRCYATRGYAACV
BGTTRCYATRGYAACV		 SELEX
Jolma et al.(2013)
RFX5_1 		0.695 0.582
RFX5
M03459_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_2 		0.695 0.582
RFX5
M03460_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_3 		0.695 0.582
RFX5
M05725_2.00 		Homo sapiens
BGTTRCYANGBGTTGCYRN
NYRGCAACVCNTRGYAACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_1 		0.695 0.582
RFX5
M05726_2.00 		Homo sapiens
NYRVYAACSGTTRCYAN
NTRGYAACSGTTRBYRN		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_2 		0.695 0.582
RFX5
M08009_2.00 		Homo sapiens
KCRBYDGTTRCYRRG
CYYRGYAACHRVYGM		 ChIP-seq
Gerstein et al.(2012)
GM12878_RFX5_Stanford 		0.695 0.582
RFX5
M08010_2.00 		Homo sapiens
DBVBYDGTTGCYRGGBVRR
YYBVCCYRGCAACHRVBVH		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_RFX5_Stanford 		0.695 0.582
RFX5
M08011_2.00 		Homo sapiens
TCVBYDGTTDCYRDG
CHYRGHAACHRVBGA		 ChIP-seq
Gerstein et al.(2012)
HeLa-S3_RFX5_Stanford 		0.695 0.582
RFX5
M08012_2.00 		Homo sapiens
YDGTTRCYRKGBVRV
BYBVCMYRGYAACHR		 ChIP-seq
Gerstein et al.(2012)
HepG2_RFX5_Stanford 		0.695 0.582
RFX5
M09364_2.00 		Homo sapiens
VNNVBYDGTTGCYRKGNVRV
BYBNCMYRGCAACHRVBNNB		 Misc
Kulakovskiy et al.(2013)
RFX5_HUMAN.H11MO.0.A 		0.695 0.582
RFX5
M09629_2.00 		Homo sapiens
NDGTTRCYADGV
BCHTRGYAACHN		 Misc
Heinz et al.(2010)
GM12878-Rfx5_GSE31477 		0.695 0.582
RFX5
M11249_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_03 		0.695 0.582
RFX5
M11250_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_05 		0.695 0.582
RFX5
M05727_2.00 		Homo sapiens
BGTYRYYRNGBGTTGYYRN
NYRRCAACVCNYRRYRACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_1 		0.695 0.582
RFX5
M05728_2.00 		Homo sapiens
NTRGYAASSGTYRBYRN
NYRVYRACSSTTRCYAN		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_2 		0.695 0.582
For this family, TFs with SR scores > 0.650 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSGACP00000020906 RFX 8 88

Links

Other RFX family TFs
Other Gasterosteus aculeatus TFs

235 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
28095.m000094 Ricinus communis 28095.m000094 N
AMTR_s00152p00031760 Amborella trichopoda AMTR_s00152p00031760 N
Aquca_075_00033 Aquilegia coerulea Aquca_075_00033 N
ATBZIP24 Vitis vinifera VIT_13s0158g00380 N
BGIOSGA004628 Oryza indica BGIOSGA004628 N
BGIOSGA017801 Oryza indica BGIOSGA017801 N
BGIOSGA034759 Oryza indica BGIOSGA034759 N
BGIOSGA036957 Oryza indica BGIOSGA036957 N
Bo1g006780 Brassica oleracea Bo1g006780 N
Bo3g091670 Brassica oleracea Bo3g091670 N
Bo3g167300 Brassica oleracea Bo3g167300 N
Bo9g024230 Brassica oleracea Bo9g024230 N
Bostr.18351s0138 Boechera stricta Bostr.18351s0138 N
Bostr.7867s1363 Boechera stricta Bostr.7867s1363 N
Bra011580 Brassica rapa Bra011580 N
Bra013048 Brassica rapa Bra013048 N
Bra034668 Brassica rapa Bra034668 N
BRADI2G21197 Brachypodium distachyon BRADI2G21197 N
BZIP19 Arabidopsis thaliana AT4G35040 N
bZIP19 Arabidopsis lyrata scaffold_700623.1 N
BZIP23 Arabidopsis thaliana AT2G16770 N
bZIP23 Arabidopsis lyrata scaffold_303970.1 N
Cagra.0839s0005 Capsella grandiflora Cagra.0839s0005 N
Cagra.2350s0050 Capsella grandiflora Cagra.2350s0050 N
Carubv10005538m.g Capsella rubella Carubv10005538m.g N
Carubv10014436m.g Capsella rubella Carubv10014436m.g N
cassava766.valid.m1 Manihot esculenta cassava766.valid.m1 N
cassava767.valid.m1 Manihot esculenta cassava767.valid.m1 N
cassava7721.valid.m1 Manihot esculenta cassava7721.valid.m1 N
Ca_24168 Cicer arietinum Ca_24168 N
Ciclev10028931m.g Citrus clementina Ciclev10028931m.g N
Cla016078 Citrullus lanatus Cla016078 N
Cla020585 Citrullus lanatus Cla020585 N
Cucsa.234250 Cucumis sativus Cucsa.234250 N
Cucsa.370550 Cucumis sativus Cucsa.370550 N
Eucgr.I01416 Eucalyptus grandis Eucgr.I01416 N
F775_16738 Aegilops tauschii F775_16738 N
gene07554-v1.0-hybrid Fragaria vesca gene07554-v1.0-hybrid N
GLYMA11G11540 Glycine max GLYMA11G11540 N
Gorai.002G197800 Gossypium raimondii Gorai.002G197800 N
Gorai.005G254200 Gossypium raimondii Gorai.005G254200 N
GRMZM2G033230 Zea mays GRMZM2G033230 N
GRMZM2G175870 Zea mays GRMZM2G175870 N
GSMUA_Achr4G00320_001 Musa acuminata GSMUA_Achr4G00320_001 N
GSMUA_Achr4G10150_001 Musa acuminata GSMUA_Achr4G10150_001 N
GSMUA_Achr7G03840_001 Musa acuminata GSMUA_Achr7G03840_001 N
gw1.34.187.1 Physcomitrella patens gw1.34.187.1 N
LPERR01G29490 Leersia perrieri LPERR01G29490 N
LPERR05G17340 Leersia perrieri LPERR05G17340 N
LPERR11G02130 Leersia perrieri LPERR11G02130 N
LPERR12G02240 Leersia perrieri LPERR12G02240 N
Lus10005073.g Linum usitatissimum Lus10005073.g N
Lus10014121.g Linum usitatissimum Lus10014121.g N
Lus10027847.g Linum usitatissimum Lus10027847.g N
MDP0000159670 Malus domestica MDP0000159670 N
mgf003848m Mimulus guttatus mgf003848m N
MLOC_13410 Hordeum vulgare MLOC_13410 N
MLOC_5655 Hordeum vulgare MLOC_5655 N
MTR_4g073100 Medicago truncatula MTR_4g073100 N
OB0044G10110 Oryza brachyantha OB0044G10110 N
OB01G42980 Oryza brachyantha OB01G42980 N
OB05G28920 Oryza brachyantha OB05G28920 N
OB12G12480 Oryza brachyantha OB12G12480 N
OBART01G34150 Oryza barthii OBART01G34150 N
OBART05G21450 Oryza barthii OBART05G21450 N
OBART11G02390 Oryza barthii OBART11G02390 N
OBART12G02110 Oryza barthii OBART12G02110 N
OGLUM01G38420 Oryza glumaepatula OGLUM01G38420 N
OGLUM05G22660 Oryza glumaepatula OGLUM05G22660 N
OGLUM11G02090 Oryza glumaepatula OGLUM11G02090 N
OLONG_011776 Oryza longistaminata OLONG_011776 N
OLONG_016758 Oryza longistaminata OLONG_016758 N
OMERI01G30960 Oryza meridionalis OMERI01G30960 N
OMERI12G01070 Oryza meridionalis OMERI12G01070 N
ONIVA01G38950 Oryza nivara ONIVA01G38950 N
ONIVA05G22130 Oryza nivara ONIVA05G22130 N
ONIVA11G02620 Oryza nivara ONIVA11G02620 N
OPUNC01G33180 Oryza punctata OPUNC01G33180 N
OPUNC05G19110 Oryza punctata OPUNC05G19110 N
OPUNC12G02170 Oryza punctata OPUNC12G02170 N
orange1.1g024365m.g Citrus sinensis orange1.1g024365m.g N
ORGLA01G0280700 Oryza glaberrima ORGLA01G0280700 N
ORGLA05G0186200 Oryza glaberrima ORGLA05G0186200 N
ORUFI01G37470 Oryza rufipogon ORUFI01G37470 N
ORUFI05G22690 Oryza rufipogon ORUFI05G22690 N
ORUFI12G02510 Oryza rufipogon ORUFI12G02510 N
OS01G0801901 Oryza sativa OS01G0801901 N
OS05G0495200 Oryza sativa OS05G0495200 N
OS11G0139500 Oryza sativa OS11G0139500 N
Pavir.Ea03172 Panicum virgatum Pavir.Ea03172 N
Pavir.Eb03174 Panicum virgatum Pavir.Eb03174 N
Pavir.J00911 Panicum virgatum Pavir.J00911 N
PDK_20s1365351g001 Phoenix dactylifera PDK_20s1365351g001 N
PDK_20s1623091g001 Phoenix dactylifera PDK_20s1623091g001 N
PGSC0003DMG400011944 Solanum tuberosum PGSC0003DMG400011944 N
PGSC0003DMG401006188 Solanum tuberosum PGSC0003DMG401006188 N
Pm020862 Prunus mume Pm020862 N
POPTR_0001s05750 Populus trichocarpa POPTR_0001s05750 N
POPTR_0003s20320 Populus trichocarpa POPTR_0003s20320 N
POPTR_0009s13730 Populus trichocarpa POPTR_0009s13730 N
PRUPE_ppa009913mg Prunus persica PRUPE_ppa009913mg N
SapurV1A.0009s0600 Salix purpurea SapurV1A.0009s0600 N
SapurV1A.0445s0220 Salix purpurea SapurV1A.0445s0220 N
SapurV1A.0923s0130 Salix purpurea SapurV1A.0923s0130 N
Sb03g037300 Sorghum bicolor Sb03g037300 N
Sb09g024290 Sorghum bicolor Sb09g024290 N
SELMODRAFT_409920 Selaginella moellendorffii SELMODRAFT_409920 N
SELMODRAFT_414462 Selaginella moellendorffii SELMODRAFT_414462 N
Si002893m.g Setaria italica Si002893m.g N
Solyc01g111580.2 Solanum lycopersicum Solyc01g111580.2 N
TCM_006625 Theobroma cacao TCM_006625 N
TCM_042360 Theobroma cacao TCM_042360 N
Thhalv10022810m.g Eutrema salsugineum Thhalv10022810m.g N
Thhalv10026007m.g Eutrema salsugineum Thhalv10026007m.g N
TRAES3BF086800020CFD_g Triticum aestivum TRAES3BF086800020CFD_g N
Traes_1AL_00A8A2030 Triticum aestivum Traes_1AL_00A8A2030 N
TRIUR3_18393 Triticum urartu TRIUR3_18393 N
TRIUR3_21208 Triticum urartu TRIUR3_21208 N
VIT_03s0038g02420 Vitis vinifera VIT_03s0038g02420 N