ENSMMUG00000013172 (Macaca mulatta)
RFX

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02257 (RFX_DNA_binding) IPR003150 ENSMMUG00000013172 T318338_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RFX5
M03458_2.00 		Homo sapiens
BGTTRCYATRGYAACV
BGTTRCYATRGYAACV		 SELEX
Jolma et al.(2013)
RFX5_1 		0.792 1.000
RFX5
M03459_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_2 		0.792 1.000
RFX5
M03460_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_3 		0.792 1.000
RFX5
M05725_2.00 		Homo sapiens
BGTTRCYANGBGTTGCYRN
NYRGCAACVCNTRGYAACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_1 		0.792 1.000
RFX5
M05726_2.00 		Homo sapiens
NYRVYAACSGTTRCYAN
NTRGYAACSGTTRBYRN		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_2 		0.792 1.000
RFX5
M08009_2.00 		Homo sapiens
KCRBYDGTTRCYRRG
CYYRGYAACHRVYGM		 ChIP-seq
Gerstein et al.(2012)
GM12878_RFX5_Stanford 		0.792 1.000
RFX5
M08010_2.00 		Homo sapiens
DBVBYDGTTGCYRGGBVRR
YYBVCCYRGCAACHRVBVH		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_RFX5_Stanford 		0.792 1.000
RFX5
M08011_2.00 		Homo sapiens
TCVBYDGTTDCYRDG
CHYRGHAACHRVBGA		 ChIP-seq
Gerstein et al.(2012)
HeLa-S3_RFX5_Stanford 		0.792 1.000
RFX5
M08012_2.00 		Homo sapiens
YDGTTRCYRKGBVRV
BYBVCMYRGYAACHR		 ChIP-seq
Gerstein et al.(2012)
HepG2_RFX5_Stanford 		0.792 1.000
RFX5
M09364_2.00 		Homo sapiens
VNNVBYDGTTGCYRKGNVRV
BYBNCMYRGCAACHRVBNNB		 Misc
Kulakovskiy et al.(2013)
RFX5_HUMAN.H11MO.0.A 		0.792 1.000
RFX5
M09629_2.00 		Homo sapiens
NDGTTRCYADGV
BCHTRGYAACHN		 Misc
Heinz et al.(2010)
GM12878-Rfx5_GSE31477 		0.792 1.000
RFX5
M11249_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_03 		0.792 1.000
RFX5
M11250_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_05 		0.792 1.000
RFX5
M05727_2.00 		Homo sapiens
BGTYRYYRNGBGTTGYYRN
NYRRCAACVCNYRRYRACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_1 		0.792 1.000
RFX5
M05728_2.00 		Homo sapiens
NTRGYAASSGTYRBYRN
NYRVYRACSSTTRCYAN		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_2 		0.792 1.000
Rfx7
M00823_2.00 		Mus musculus
GTYRCYRNSB
VSNYRGYRAC		 PBM
Weirauch et al.(2013)
pTH3516 		0.710 0.620
Rfx7
M00187_2.00 		Mus musculus
BGTHDYYRNN
NNYRRHDACV		 PBM
Badis et al.(2009)
Rfxdc2_3516 		0.710 0.620
RFX7
M05729_2.00 		Homo sapiens
BGTTRCYRY
RYRGYAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_HT-SELEX 		0.710 0.620
RFX7
M05730_2.00 		Homo sapiens
BGTTGCYRB
VYRGCAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_Methyl-HT-SELEX 		0.710 0.620
For this family, TFs with SR scores > 0.650 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSMMUP00000017303 RFX 89 168

Links

Other RFX family TFs
Other Macaca mulatta TFs

227 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ANIA_01134 Aspergillus nidulans CADANIAG00001495 N
COCC4DRAFT_71230 Bipolaris maydis COCC4DRAFT_71230 I
COCCADRAFT_5667 Bipolaris zeicola COCCADRAFT_5667 I
COCMIDRAFT_102049 Bipolaris oryzae COCMIDRAFT_102049 I
COCSADRAFT_76883 Bipolaris sorokiniana COCSADRAFT_76883 I
COCVIDRAFT_27956 Bipolaris victoriae COCVIDRAFT_27956 I
COCVIDRAFT_37179 Bipolaris victoriae COCVIDRAFT_37179 I
estExt_fgenesh1_pg.C_40955 Cryphonectria parasitica estExt_fgenesh1_pg.C_40955 I
estExt_Genewise1.C_80993 Neurospora discreta estExt_Genewise1.C_80993 I
estExt_Genewise1Plus.C_150252 Cochliobolus heterostrophus C5 estExt_Genewise1Plus.C_150252 I
estExt_Genewise1Plus.C_50594 Cochliobolus heterostrophus C5 estExt_Genewise1Plus.C_50594 I
F503_06755 Ophiostoma piceae uamh F503_06755 I
fgenesh1_pg.C_scaffold_40000014 Mycosphaerella fijiensis fgenesh1_pg.C_scaffold_40000014 I
GGTG_00383 Gaeumannomyces graminis GGTG_00383 I
GLRG_07125 Colletotrichum graminicola GLRG_07125 I
LEMA_P062270.1 Leptosphaeria maculans LEMA_P062270.1 I
MAPG_07478 Magnaporthe poae MAPG_07478 I
MGG_07777 Magnaporthe oryzae MGG_07777 I
MYCFIDRAFT_170117 Pseudocercospora fijiensis MYCFIDRAFT_170117 I
MYCTH_2067244 Myceliophthora thermophila MYCTH_2067244 I
NEUTE1DRAFT_147986 Neurospora tetrasperma NEUTE1DRAFT_147986 I
PFICI_15081 Pestalotiopsis fici PFICI_15081 I
PODANS_5_5100 Podospora anserina PODANS_5_5100 I
PTT_06800 Pyrenophora teres PTT_06800 I
PV09_01109 Verruconis gallopava PV09_01109 I
PVAR5_3766 Byssochlamys spectabilis PVAR5_3766 I
qa-1F Neurospora crassa NCU06028 D
SETTUDRAFT_140992 Setosphaeria turcica SETTUDRAFT_140992 I
SMAC_07407 Sordaria macrospora SMAC_07407 I
SPBR_06572 Sporothrix brasiliensis SPBR_06572 I
THITE_2116895 Thielavia terrestris THITE_2116895 I
UCRNP2_4108 Neofusicoccum parvum UCRNP2_4108 I
VDAG_08177 Verticillium dahliae VDAG_08177 I
VDBG_08512 Verticillium alfalfae VDBG_08512 I
VDBG_08512 Verticillium albo atrum VDBG_08512 I
W97_04550 Coniosporium apollinis W97_04550 I