ACOM036649 (Anopheles coluzzii)
RFX

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02257 (RFX_DNA_binding) IPR003150 ACOM036649 T319119_2.00 Vectorbase (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Rfx7
M00823_2.00 		Mus musculus
GTYRCYRNSB
VSNYRGYRAC		 PBM
Weirauch et al.(2013)
pTH3516 		0.688 0.544
Rfx7
M00187_2.00 		Mus musculus
BGTHDYYRNN
NNYRRHDACV		 PBM
Badis et al.(2009)
Rfxdc2_3516 		0.688 0.544
RFX7
M05729_2.00 		Homo sapiens
BGTTRCYRY
RYRGYAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_HT-SELEX 		0.688 0.544
RFX7
M05730_2.00 		Homo sapiens
BGTTGCYRB
VYRGCAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_Methyl-HT-SELEX 		0.688 0.544
RFX5
M03458_2.00 		Homo sapiens
BGTTRCYATRGYAACV
BGTTRCYATRGYAACV		 SELEX
Jolma et al.(2013)
RFX5_1 		0.672 0.468
RFX5
M03459_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_2 		0.672 0.468
RFX5
M03460_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_3 		0.672 0.468
RFX5
M05725_2.00 		Homo sapiens
BGTTRCYANGBGTTGCYRN
NYRGCAACVCNTRGYAACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_1 		0.672 0.468
RFX5
M05726_2.00 		Homo sapiens
NYRVYAACSGTTRCYAN
NTRGYAACSGTTRBYRN		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_2 		0.672 0.468
RFX5
M08009_2.00 		Homo sapiens
KCRBYDGTTRCYRRG
CYYRGYAACHRVYGM		 ChIP-seq
Gerstein et al.(2012)
GM12878_RFX5_Stanford 		0.672 0.468
RFX5
M08010_2.00 		Homo sapiens
DBVBYDGTTGCYRGGBVRR
YYBVCCYRGCAACHRVBVH		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_RFX5_Stanford 		0.672 0.468
RFX5
M08011_2.00 		Homo sapiens
TCVBYDGTTDCYRDG
CHYRGHAACHRVBGA		 ChIP-seq
Gerstein et al.(2012)
HeLa-S3_RFX5_Stanford 		0.672 0.468
RFX5
M08012_2.00 		Homo sapiens
YDGTTRCYRKGBVRV
BYBVCMYRGYAACHR		 ChIP-seq
Gerstein et al.(2012)
HepG2_RFX5_Stanford 		0.672 0.468
RFX5
M09364_2.00 		Homo sapiens
VNNVBYDGTTGCYRKGNVRV
BYBNCMYRGCAACHRVBNNB		 Misc
Kulakovskiy et al.(2013)
RFX5_HUMAN.H11MO.0.A 		0.672 0.468
RFX5
M09629_2.00 		Homo sapiens
NDGTTRCYADGV
BCHTRGYAACHN		 Misc
Heinz et al.(2010)
GM12878-Rfx5_GSE31477 		0.672 0.468
RFX5
M11249_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_03 		0.672 0.468
RFX5
M11250_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_05 		0.672 0.468
RFX5
M05727_2.00 		Homo sapiens
BGTYRYYRNGBGTTGYYRN
NYRRCAACVCNYRRYRACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_1 		0.672 0.468
RFX5
M05728_2.00 		Homo sapiens
NTRGYAASSGTYRBYRN
NYRVYRACSSTTRCYAN		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_2 		0.672 0.468
For this family, TFs with SR scores > 0.650 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ACOM036649-PA RFX 176 254

Links

Other RFX family TFs
Other Anopheles coluzzii TFs

222 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
COCCADRAFT_5667 Bipolaris zeicola COCCADRAFT_5667 I
COCVIDRAFT_27956 Bipolaris victoriae COCVIDRAFT_27956 I
estExt_Genewise1.C_80993 Neurospora discreta estExt_Genewise1.C_80993 I
estExt_Genewise1Plus.C_50594 Cochliobolus heterostrophus C5 estExt_Genewise1Plus.C_50594 I
e_gw1.3.120.1 Cryphonectria parasitica e_gw1.3.120.1 I
F503_06755 Ophiostoma piceae uamh F503_06755 I
fgenesh1_pg.C_scaffold_40000014 Mycosphaerella fijiensis fgenesh1_pg.C_scaffold_40000014 I
GGTG_00383 Gaeumannomyces graminis GGTG_00383 I
GLRG_07125 Colletotrichum graminicola GLRG_07125 I
MAPG_07478 Magnaporthe poae MAPG_07478 I
MGG_07777 Magnaporthe oryzae MGG_07777 I
MPH_01982 Macrophomina phaseolina MPH_01982 I
MYCFIDRAFT_170117 Pseudocercospora fijiensis MYCFIDRAFT_170117 I
MYCTH_2067244 Myceliophthora thermophila MYCTH_2067244 I
NEUTE1DRAFT_147986 Neurospora tetrasperma NEUTE1DRAFT_147986 I
OIDMADRAFT_52514 Oidiodendron maius OIDMADRAFT_52514 I
PFICI_15081 Pestalotiopsis fici PFICI_15081 I
PODANS_5_5100 Podospora anserina PODANS_5_5100 I
PTT_06800 Pyrenophora teres PTT_06800 I
PV09_01109 Verruconis gallopava PV09_01109 I
PVAR5_3766 Byssochlamys spectabilis PVAR5_3766 I
qa-1F Neurospora crassa NCU06028 D
SETTUDRAFT_140992 Setosphaeria turcica SETTUDRAFT_140992 I
SMAC_07407 Sordaria macrospora SMAC_07407 I
SNOG_07941 Phaeosphaeria nodorum SNOG_07941 N
SNOG_07941 Stagonospora nodorum SNOG_07941 N
SPBR_06572 Sporothrix brasiliensis SPBR_06572 I
THITE_2116895 Thielavia terrestris THITE_2116895 I
UCRNP2_4108 Neofusicoccum parvum UCRNP2_4108 I
VDAG_08177 Verticillium dahliae VDAG_08177 I
VDBG_08512 Verticillium alfalfae VDBG_08512 I
VDBG_08512 Verticillium albo atrum VDBG_08512 I
W97_04550 Coniosporium apollinis W97_04550 I