CpipJ_CPIJ006372 (Culex pipiens)
Runt

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00853 (Runt) IPR013524 CpipJ_CPIJ006372 T319277_2.00 Broad (2016-May-1)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
lz
M03964_2.00 		Drosophila melanogaster
HRACCGCAAHM
KDTTGCGGTYD		 SELEX
Nitta et al.(2015)
lz_1 		0.763 0.763
lz
M03965_2.00 		Drosophila melanogaster
HVACCRCARWAACCRCAV
BTGYGGTTWYTGYGGTBD		 SELEX
Nitta et al.(2015)
lz_2 		0.763 0.763
lz
M03966_2.00 		Drosophila melanogaster
WRACCRCAWTAACCRCAA
TTGYGGTTAWTGYGGTYW		 SELEX
Nitta et al.(2015)
lz_3 		0.763 0.763
lz
M03967_2.00 		Drosophila melanogaster
HRACCGCAAAACCRCAR
YTGYGGTTTTGCGGTYD		 SELEX
Nitta et al.(2015)
lz_4 		0.763 0.763
run
M06444_2.00 		Drosophila melanogaster
WAACCGCAR
YTGCGGTTW		 B1H
Zhu et al.(2011)
run_Bgb_NBT_FBgn0003300 		0.742 0.742
Runx1
M08163_2.00 		Mus musculus
HRRCCACARVN
NBYTGTGGYYD		 ChIP-seq
Mathelier et al.(2014)
MA0002.2 		0.722 0.722
RUNX1
M09371_2.00 		Homo sapiens
NWAACCACARV
BYTGTGGTTWN		 Misc
Kulakovskiy et al.(2013)
RUNX1_HUMAN.H11MO.0.A 		0.722 0.722
Runx1
M09372_2.00 		Mus musculus
VWRACCACARVV
BBYTGTGGTYWB		 Misc
Kulakovskiy et al.(2013)
RUNX1_MOUSE.H11MO.0.A 		0.722 0.722
RUNX1
M09632_2.00 		Homo sapiens
HAACCACADV
BHTGTGGTTD		 Misc
Heinz et al.(2010)
Jurkat-RUNX1_GSE29180 		0.722 0.722
RUNX1
M09631_2.00 		Homo sapiens
VCCACWTCCTBY
RVAGGAWGTGGB		 Misc
Heinz et al.(2010)
Jurkat-RUNX1_GSE17954 		0.722 0.722
Runx1
M09633_2.00 		Mus musculus
NWAACCACAR
YTGTGGTTWN		 Misc
Heinz et al.(2010)
HPC7-Runx1_GSE22178 		0.722 0.722
RUNX1
M11258_2.00 		Homo sapiens
ACCRCA
TGYGGT		 Transfac
Matys et al.(2006)
V$AML1_01 		0.722 0.722
RUNX1
M11259_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q4_01 		0.722 0.722
RUNX1
M11260_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q4_02 		0.722 0.722
RUNX1
M11261_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q4 		0.722 0.722
RUNX1
M11262_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q5 		0.722 0.722
RUNX1
M11263_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q6 		0.722 0.722
Runx2
M01307_2.00 		Mus musculus
NHDACCRCAN
NTGYGGTHDN		 PBM
Lambert et al.(2019)
pTH9764 		0.701 0.701
RUNX2
M03468_2.00 		Homo sapiens
HRACCGCAAACCRCRD
HYGYGGTTTGCGGTYD		 SELEX
Jolma et al.(2013)
RUNX2_1 		0.701 0.701
RUNX2
M03469_2.00 		Homo sapiens
HRACCRCADWWACCRCAD
HTGYGGTWWHTGYGGTYD		 SELEX
Jolma et al.(2013)
RUNX2_2 		0.701 0.701
RUNX2
M03470_2.00 		Homo sapiens
WAACCRCAR
YTGYGGTTW		 SELEX
Jolma et al.(2013)
RUNX2_3 		0.701 0.701
RUNX3
M03464_2.00 		Homo sapiens
HRACCGCAAACCRCAN
NTGYGGTTTGCGGTYD		 SELEX
Jolma et al.(2013)
RUNX3_1 		0.701 0.701
RUNX3
M03465_2.00 		Homo sapiens
WAACCRCARN
NYTGYGGTTW		 SELEX
Jolma et al.(2013)
RUNX3_2 		0.701 0.701
RUNX3
M03466_2.00 		Homo sapiens
HDACCRCADWAACCRCRN
NYGYGGTTWHTGYGGTHD		 SELEX
Jolma et al.(2013)
RUNX3_3 		0.701 0.701
RUNX3
M03467_2.00 		Homo sapiens
HRACCRCAAH
DTTGYGGTYD		 SELEX
Jolma et al.(2013)
RUNX3_4 		0.701 0.701
RUNX3
M02751_2.00 		Homo sapiens
WACCRCAM
KTGYGGTW		 SELEX
Jolma et al.(2010)
RUNX3_monomer 		0.701 0.701
RUNX2
M05733_2.00 		Homo sapiens
NHRACCRCADWAACCRCAVN
NBTGYGGTTWHTGYGGTYDN		 SELEX
Yin et al.(2017)
RUNX2_eDBD_HT-SELEX 		0.701 0.701
RUNX3
M05731_2.00 		Homo sapiens
YWAACCGCAAAAACCGCARV
BYTGCGGTTTTTGCGGTTWR		 SELEX
Yin et al.(2017)
RUNX3_FL_HT-SELEX 		0.701 0.701
RUNX2
M09370_2.00 		Homo sapiens
MMHAACCACAVVMH
DKBBTGTGGTTDKK		 Misc
Kulakovskiy et al.(2013)
RUNX2_HUMAN.H11MO.0.A 		0.701 0.701
RUNX3
M09369_2.00 		Homo sapiens
HAACCACARN
NYTGTGGTTD		 Misc
Kulakovskiy et al.(2013)
RUNX3_HUMAN.H11MO.0.A 		0.701 0.701
Runx2
M09373_2.00 		Mus musculus
VWRACCACARVV
BBYTGTGGTYWB		 Misc
Kulakovskiy et al.(2013)
RUNX2_MOUSE.H11MO.0.A 		0.701 0.701
Runx3
M09374_2.00 		Mus musculus
NHRACCACARVN
NBYTGTGGTYDN		 Misc
Kulakovskiy et al.(2013)
RUNX3_MOUSE.H11MO.0.A 		0.701 0.701
RUNX2
M09630_2.00 		Homo sapiens
NHVACCACANNN
NNNTGTGGTBDN		 Misc
Heinz et al.(2010)
PCa-RUNX2_GSE33889 		0.701 0.701
RUNX3
M11252_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML2_Q3_01 		0.701 0.701
RUNX3
M11253_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML2_Q3 		0.701 0.701
RUNX3
M11254_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML2_Q4 		0.701 0.701
RUNX2
M11255_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML3_Q3 		0.701 0.701
RUNX2
M11256_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML3_Q6 		0.701 0.701
RUNX2
M11257_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$OSF2_Q6 		0.701 0.701
RUNX2
M05734_2.00 		Homo sapiens
NWAACCACRAAAACCACRRN
NYYGTGGTTTTYGTGGTTWN		 SELEX
Yin et al.(2017)
RUNX2_eDBD_Methyl-HT-SELEX 		0.701 0.701
RUNX3
M05732_2.00 		Homo sapiens
HWAACCACRAAAACCACRARN
NYTYGTGGTTTTYGTGGTTWD		 SELEX
Yin et al.(2017)
RUNX3_FL_Methyl-HT-SELEX 		0.701 0.701
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
CpipJ_CPIJ006372-RA Runt 94 191

Links

Other Runt family TFs
Other Culex pipiens TFs

211 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
A1O1_06649 Capronia coronata A1O1_06649 I
A1O3_10484 Capronia epimyces A1O3_10484 I
A1O5_10159 Cladophialophora psammophila A1O5_10159 I
A1O7_01941 Cladophialophora yegresii A1O7_01941 I
A1O9_06866 Exophiala aquamarina A1O9_06866 I
AB00861.1 Alternaria brassicicola AB00861.1 I
ACLA_030770 Aspergillus clavatus CADACLAG00002327 I
ACRE_020490 Acremonium chrysogenum ACRE_020490 I
ada-3 Neurospora crassa NCU02896 D
AFUA_1G03800 Aspergillus fumigatus CADAFUAG00009294 I
ANIA_10504 Aspergillus nidulans CADANIAG00004652 I
ARB_01292 Arthroderma benhamiae ARB_01292 I
ATEG_03831 Aspergillus terreus CADATEAG00008906 I
AUEXF2481DRAFT_27177 Aureobasidium subglaciale AUEXF2481DRAFT_27177 I
BAUCODRAFT_63686 Baudoinia compniacensis BAUCODRAFT_63686 I
BBA_01669 Beauveria bassiana BBA_01669 I
Bcin05g02960 Botrytis cinerea Bcin05g02960 I
CADAFLAG00002225 Aspergillus flavus CADAFLAG00002225 N
CADANGAG00014030 Aspergillus niger CADANGAG00014030 I
CADAORAG00001531 Aspergillus oryzae CADAORAG00001531 N
CH063_12126 Colletotrichum higginsianum CH063_12126 I
CHGG_02020 Chaetomium globosum CHGG_02020 I
CIMG_04610 Coccidioides immitis CIMG_04610 I
Cob_07183 Colletotrichum orbiculare Cob_07183 I
CPUR_05074 Claviceps purpurea CPUR_05074 I
CSUB01_10649 Colletotrichum sublineola CSUB01_10649 I
DOTSEDRAFT_127076 Dothistroma septosporum DOTSEDRAFT_127076 I
estExt_Genewise1Plus.C_270154 Cochliobolus heterostrophus C5 estExt_Genewise1Plus.C_270154 I
estExt_Genewise1Plus.C_40406 Neurospora discreta estExt_Genewise1Plus.C_40406 I
estExt_Genewise1Plus.C_41920 Cryphonectria parasitica estExt_Genewise1Plus.C_41920 I
estExt_Genewise1Plus.C_sca_1_chr1_3_01292 Nectria haematococca estExt_Genewise1Plus.C_sca_1_chr1_3_01292 I
EURHEDRAFT_413212 Aspergillus ruber EURHEDRAFT_413212 N
e_gw1.1.2059.1 Mycosphaerella graminicola e_gw1.1.2059.1 I
e_gw1.9.518.1 Mycosphaerella fijiensis e_gw1.9.518.1 I
FFUJ_00433 Fusarium fujikuroi FFUJ_00433 I
fgenesh1_pm.00129_#_214 Aspergillus carbonarius fgenesh1_pm.00129_#_214 I
FGRRES_00800 Fusarium graminearum FGRRES_00800 I
FOXG_01137 Fusarium oxysporum FOXG_01137 I
FPSE_12020 Fusarium pseudograminearum FPSE_12020 I
FVEG_00379 Fusarium verticillioides FVEG_00379 I
G647_09757 Cladophialophora carrionii G647_09757 I
GLRG_00909 Colletotrichum graminicola GLRG_00909 I
H101_06954 Trichophyton interdigitale H101_06954 I
H105_02238 Trichophyton soudanense H105_02238 I
HCBG_00529 Histoplasma capsulatum HCBG_00529 N
HMPREF1120_04361 Exophiala dermatitidis HMPREF1120_04361 I
HMPREF1541_07144 Cyphellophora europaea HMPREF1541_07144 I
M437DRAFT_65869 Aureobasidium melanogenum M437DRAFT_65869 I
M438DRAFT_32848 Aureobasidium pullulans M438DRAFT_32848 I
MAC_05495 Metarhizium acridum MAC_05495 I
MAJ_05922 Metarhizium majus MAJ_05922 I
MAM_07411 Metarhizium album MAM_07411 I
MANI_000308 Metarhizium anisopliae MANI_000308 I
MBR_00159 Metarhizium brunneum MBR_00159 I
MCYG_05794 Microsporum canis MCYG_05794 I
MCYG_05794 Arthroderma otae MCYG_05794 I
MGU_09666 Metarhizium guizhouense MGU_09666 I
MGYG_02900 Microsporum gypseum MGYG_02900 I
MPH_09781 Macrophomina phaseolina MPH_09781 I
MYCFIDRAFT_36148 Pseudocercospora fijiensis MYCFIDRAFT_36148 I
Mycgr3G33662 Zymoseptoria tritici Mycgr3G33662 I
MYCTH_2307957 Myceliophthora thermophila MYCTH_2307957 I
NechaG65901 Fusarium solani NechaG65901 I
NEUTE1DRAFT_92483 Neurospora tetrasperma NEUTE1DRAFT_92483 I
NFIA_020870 Neosartorya fischeri CADNFIAG00001734 I
OIDMADRAFT_107580 Oidiodendron maius OIDMADRAFT_107580 N
Pc16g08180 Penicillium chrysogenum Pc16g08180 I
PCH_Pc16g08180 Penicillium rubens PCH_Pc16g08180 I
PEX1_002120 Penicillium expansum PEX1_002120 I
PFICI_03077 Pestalotiopsis fici PFICI_03077 I
PITC_030780 Penicillium italicum PITC_030780 I
PMAA_055120 Talaromyces marneffei PMAA_055120 I
PMAA_055120 Penicillium marneffei PMAA_055120 I
PODANS_1_1340 Podospora anserina PODANS_1_1340 I
PTRG_10316 Pyrenophora triticirepentis PTRG_10316 I
PTT_13784 Pyrenophora teres PTT_13784 I
PV04_02129 Capronia semiimmersa PV04_02129 I
PV05_07659 Exophiala xenobiotica PV05_07659 I
PV06_07997 Exophiala oligosperma PV06_07997 I
PV07_02419 Cladophialophora immunda PV07_02419 I
PV09_00486 Verruconis gallopava PV09_00486 I
PV11_03531 Exophiala sideris PV11_03531 I
S40285_01095 Stachybotrys chlorohalonata S40285_01095 I
S40288_07746 Stachybotrys chartarum S40288_07746 I
SAPIO_CDS1279 Scedosporium apiospermum SAPIO_CDS1279 I
SBOR_5952 Sclerotinia borealis SBOR_5952 I
SETTUDRAFT_19016 Setosphaeria turcica SETTUDRAFT_19016 I
SMAC_00550 Sordaria macrospora SMAC_00550 I
SNOG_00466 Stagonospora nodorum SNOG_00466 I
SNOG_00466 Phaeosphaeria nodorum SNOG_00466 I
TEQG_00822 Trichophyton equinum TEQG_00822 I
THITE_123221 Thielavia terrestris THITE_123221 I
TRIATDRAFT_172200 Trichoderma atroviride TRIATDRAFT_172200 I
TRIREDRAFT_62297 Trichoderma reesei TRIREDRAFT_62297 I
TRIVIDRAFT_113147 Trichoderma virens TRIVIDRAFT_113147 I
TRV_01165 Trichophyton verrucosum TRV_01165 I
TSTA_017770 Talaromyces stipitatus TSTA_017770 I
U727_00434000191 Penicillium solitum U727_00434000191 I
UCREL1_7993 Eutypa lata UCREL1_7993 I
UCRNP2_6697 Neofusicoccum parvum UCRNP2_6697 I
UCRPA7_8612 Togninia minima UCRPA7_8612 I
UREG_01815 Uncinocarpus reesii UREG_01815 I
UV8b_5957 Ustilaginoidea virens UV8b_5957 I
VDAG_06235 Verticillium dahliae VDAG_06235 I
VHEMI05094 Torrubiella hemipterigena VHEMI05094 I
X797_002513 Metarhizium robertsii X797_002513 I
Z517_00016 Fonsecaea pedrosoi Z517_00016 I
Z518_05417 Rhinocladiella mackenziei Z518_05417 I
Z519_12694 Cladophialophora bantiana Z519_12694 I