CABZ01102124.1 (Danio rerio)
Runt

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00853 (Runt) IPR013524 ENSDARG00000103592 T319362_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Runx1
M08163_2.00 		Mus musculus
HRRCCACARVN
NBYTGTGGYYD		 ChIP-seq
Mathelier et al.(2014)
MA0002.2 		0.974 0.974
RUNX1
M09371_2.00 		Homo sapiens
NWAACCACARV
BYTGTGGTTWN		 Misc
Kulakovskiy et al.(2013)
RUNX1_HUMAN.H11MO.0.A 		0.974 0.974
Runx1
M09372_2.00 		Mus musculus
VWRACCACARVV
BBYTGTGGTYWB		 Misc
Kulakovskiy et al.(2013)
RUNX1_MOUSE.H11MO.0.A 		0.974 0.974
RUNX1
M09632_2.00 		Homo sapiens
HAACCACADV
BHTGTGGTTD		 Misc
Heinz et al.(2010)
Jurkat-RUNX1_GSE29180 		0.974 0.974
RUNX1
M09631_2.00 		Homo sapiens
VCCACWTCCTBY
RVAGGAWGTGGB		 Misc
Heinz et al.(2010)
Jurkat-RUNX1_GSE17954 		0.974 0.974
Runx1
M09633_2.00 		Mus musculus
NWAACCACAR
YTGTGGTTWN		 Misc
Heinz et al.(2010)
HPC7-Runx1_GSE22178 		0.974 0.974
RUNX1
M11258_2.00 		Homo sapiens
ACCRCA
TGYGGT		 Transfac
Matys et al.(2006)
V$AML1_01 		0.974 0.974
RUNX1
M11259_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q4_01 		0.974 0.974
RUNX1
M11260_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q4_02 		0.974 0.974
RUNX1
M11261_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q4 		0.974 0.974
RUNX1
M11262_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q5 		0.974 0.974
RUNX1
M11263_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q6 		0.974 0.974
Runx2
M01307_2.00 		Mus musculus
NHDACCRCAN
NTGYGGTHDN		 PBM
Lambert et al.(2019)
pTH9764 		0.947 0.947
RUNX2
M03468_2.00 		Homo sapiens
HRACCGCAAACCRCRD
HYGYGGTTTGCGGTYD		 SELEX
Jolma et al.(2013)
RUNX2_1 		0.947 0.947
RUNX2
M03469_2.00 		Homo sapiens
HRACCRCADWWACCRCAD
HTGYGGTWWHTGYGGTYD		 SELEX
Jolma et al.(2013)
RUNX2_2 		0.947 0.947
RUNX2
M03470_2.00 		Homo sapiens
WAACCRCAR
YTGYGGTTW		 SELEX
Jolma et al.(2013)
RUNX2_3 		0.947 0.947
RUNX2
M05733_2.00 		Homo sapiens
NHRACCRCADWAACCRCAVN
NBTGYGGTTWHTGYGGTYDN		 SELEX
Yin et al.(2017)
RUNX2_eDBD_HT-SELEX 		0.947 0.947
RUNX2
M09370_2.00 		Homo sapiens
MMHAACCACAVVMH
DKBBTGTGGTTDKK		 Misc
Kulakovskiy et al.(2013)
RUNX2_HUMAN.H11MO.0.A 		0.947 0.947
Runx2
M09373_2.00 		Mus musculus
VWRACCACARVV
BBYTGTGGTYWB		 Misc
Kulakovskiy et al.(2013)
RUNX2_MOUSE.H11MO.0.A 		0.947 0.947
RUNX2
M09630_2.00 		Homo sapiens
NHVACCACANNN
NNNTGTGGTBDN		 Misc
Heinz et al.(2010)
PCa-RUNX2_GSE33889 		0.947 0.947
RUNX2
M11255_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML3_Q3 		0.947 0.947
RUNX2
M11256_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML3_Q6 		0.947 0.947
RUNX2
M11257_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$OSF2_Q6 		0.947 0.947
RUNX2
M05734_2.00 		Homo sapiens
NWAACCACRAAAACCACRRN
NYYGTGGTTTTYGTGGTTWN		 SELEX
Yin et al.(2017)
RUNX2_eDBD_Methyl-HT-SELEX 		0.947 0.947
RUNX3
M03464_2.00 		Homo sapiens
HRACCGCAAACCRCAN
NTGYGGTTTGCGGTYD		 SELEX
Jolma et al.(2013)
RUNX3_1 		0.921 0.921
RUNX3
M03465_2.00 		Homo sapiens
WAACCRCARN
NYTGYGGTTW		 SELEX
Jolma et al.(2013)
RUNX3_2 		0.921 0.921
RUNX3
M03466_2.00 		Homo sapiens
HDACCRCADWAACCRCRN
NYGYGGTTWHTGYGGTHD		 SELEX
Jolma et al.(2013)
RUNX3_3 		0.921 0.921
RUNX3
M03467_2.00 		Homo sapiens
HRACCRCAAH
DTTGYGGTYD		 SELEX
Jolma et al.(2013)
RUNX3_4 		0.921 0.921
RUNX3
M02751_2.00 		Homo sapiens
WACCRCAM
KTGYGGTW		 SELEX
Jolma et al.(2010)
RUNX3_monomer 		0.921 0.921
RUNX3
M05731_2.00 		Homo sapiens
YWAACCGCAAAAACCGCARV
BYTGCGGTTTTTGCGGTTWR		 SELEX
Yin et al.(2017)
RUNX3_FL_HT-SELEX 		0.921 0.921
RUNX3
M09369_2.00 		Homo sapiens
HAACCACARN
NYTGTGGTTD		 Misc
Kulakovskiy et al.(2013)
RUNX3_HUMAN.H11MO.0.A 		0.921 0.921
Runx3
M09374_2.00 		Mus musculus
NHRACCACARVN
NBYTGTGGTYDN		 Misc
Kulakovskiy et al.(2013)
RUNX3_MOUSE.H11MO.0.A 		0.921 0.921
RUNX3
M11252_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML2_Q3_01 		0.921 0.921
RUNX3
M11253_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML2_Q3 		0.921 0.921
RUNX3
M11254_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML2_Q4 		0.921 0.921
RUNX3
M05732_2.00 		Homo sapiens
HWAACCACRAAAACCACRARN
NYTYGTGGTTTTYGTGGTTWD		 SELEX
Yin et al.(2017)
RUNX3_FL_Methyl-HT-SELEX 		0.921 0.921
lz
M03964_2.00 		Drosophila melanogaster
HRACCGCAAHM
KDTTGCGGTYD		 SELEX
Nitta et al.(2015)
lz_1 		0.789 0.789
lz
M03965_2.00 		Drosophila melanogaster
HVACCRCARWAACCRCAV
BTGYGGTTWYTGYGGTBD		 SELEX
Nitta et al.(2015)
lz_2 		0.789 0.789
lz
M03966_2.00 		Drosophila melanogaster
WRACCRCAWTAACCRCAA
TTGYGGTTAWTGYGGTYW		 SELEX
Nitta et al.(2015)
lz_3 		0.789 0.789
lz
M03967_2.00 		Drosophila melanogaster
HRACCGCAAAACCRCAR
YTGYGGTTTTGCGGTYD		 SELEX
Nitta et al.(2015)
lz_4 		0.789 0.789
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000134380 Runt 1 38
ENSDARP00000137237 Runt 1 38

Links

Other Runt family TFs
Other Danio rerio TFs

238 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Alligator_sinensis_CCG003708.1 Alligator sinensis Alligator_sinensis_CCG003708.1 N
Cmyd_10013223 Chelonia mydas Cmyd_10013223 N
ENSAMEG00000017065 Ailuropoda melanoleuca ENSAMEG00000017065 N
ENSAMXG00000008132 Astyanax mexicanus ENSAMXG00000008132 N
ENSBTAP00000019870-D1 Bos grunniens ENSBTAP00000019870-D1 N
ENSCSAG00000008212 Chlorocebus sabaeus ENSCSAG00000008212 N
ENSGMOG00000003455 Gadus morhua ENSGMOG00000003455 N
ENSLOCG00000000650 Lepisosteus oculatus ENSLOCG00000000650 N
ENSMEUG00000004384 Macropus eugenii ENSMEUG00000004384 N
ENSMPUG00000003040 Mustela putorius furo ENSMPUG00000003040 N
ENSNLEG00000006104 Nomascus leucogenys ENSNLEG00000006104 N
ENSOARG00000005005 Ovis aries ENSOARG00000005005 N
ENSONIG00000005476 Oreochromis niloticus ENSONIG00000005476 N
ENSPANG00000007006 Papio anubis ENSPANG00000007006 N
ENSPFOG00000009551 Poecilia formosa ENSPFOG00000009551 N
ENSPPYG00000003026 Pongo abelii ENSPPYG00000003026 N
ENSSHAG00000009488 Sarcophilus harrisii ENSSHAG00000009488 N
ENSSTOG00000023146 Ictidomys tridecemlineatus ENSSTOG00000023146 N
ENSTSYG00000001991 Tarsius syrichta ENSTSYG00000001991 N
ENSXMAG00000013170 Xiphophorus maculatus ENSXMAG00000013170 N
Myotis_brandtii_NPAS4_10030769 Myotis brandtii Myotis_brandtii_NPAS4_10030769 N
NPAS4 Sus scrofa ENSSSCG00000012942 N
NPAS4 Pan troglodytes ENSPTRG00000003923 N
NPAS4 Pteropus vampyrus ENSPVAG00000001233 N
Npas4 Rattus norvegicus ENSRNOG00000020009 N
NPAS4 Sorex araneus ENSSARG00000003603 N
npas4 Xenopus tropicalis XB-GENE-993002 N
NPAS4 Tursiops truncatus ENSTTRG00000001951 N
NPAS4 Callithrix jacchus ENSCJAG00000001482 N
NPAS4 Canis familiaris ENSCAFG00000012711 N
NPAS4 Bos taurus ENSBTAG00000014925 N
NPAS4 Echinops telfairi ENSETEG00000003654 N
NPAS4 Macaca mulatta ENSMMUG00000015982 N
NPAS4 Erinaceus europaeus ENSEEUG00000004685 N
NPAS4 Loxodonta africana ENSLAFG00000011138 N
NPAS4 Equus caballus ENSECAG00000013683 N
NPAS4 Dasypus novemcinctus ENSDNOG00000042408 N
NPAS4 Gorilla gorilla ENSGGOG00000008608 N
NPAS4 Ochotona princeps ENSOPRG00000008977 N
NPAS4 Microcebus murinus ENSMICG00000003754 N
NPAS4 Myotis lucifugus ENSMLUG00000004042 N
NPAS4 Monodelphis domestica ENSMODG00000008299 N
Npas4 Mus musculus ENSMUSG00000045903 N
NPAS4 Homo sapiens ENSG00000174576 N
NPAS4 Cavia porcellus ENSCPOG00000000685 N
NPAS4 Oryctolagus cuniculus ENSOCUG00000000905 N
NPAS4 Otolemur garnettii ENSOGAG00000010446 N
NPAS4 Felis catus ENSFCAG00000009299 N
npas4a Tetraodon nigroviridis ENSTNIG00000016823 N
npas4a Gasterosteus aculeatus ENSGACG00000017076 N
npas4a Takifugu rubripes ENSTRUG00000011857 N
npas4a Danio rerio ENSDARG00000055752 N
npas4a Oryzias latipes ENSORLG00000001999 N
npas4b Danio rerio ENSDARG00000087753 N
Ogr08183 Ophisaurus gracilis Ogr08183 N
Pvit_07066 Pogona vitticeps Pvit_07066 N