GA25684 (Drosophila pseudoobscura)
Runt

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00853 (Runt) IPR013524 FBgn0247061 T319567_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RUNX3
M03464_2.00 		Homo sapiens
HRACCGCAAACCRCAN
NTGYGGTTTGCGGTYD		 SELEX
Jolma et al.(2013)
RUNX3_1 		0.762 0.762
RUNX3
M03465_2.00 		Homo sapiens
WAACCRCARN
NYTGYGGTTW		 SELEX
Jolma et al.(2013)
RUNX3_2 		0.762 0.762
RUNX3
M03466_2.00 		Homo sapiens
HDACCRCADWAACCRCRN
NYGYGGTTWHTGYGGTHD		 SELEX
Jolma et al.(2013)
RUNX3_3 		0.762 0.762
RUNX3
M03467_2.00 		Homo sapiens
HRACCRCAAH
DTTGYGGTYD		 SELEX
Jolma et al.(2013)
RUNX3_4 		0.762 0.762
RUNX3
M02751_2.00 		Homo sapiens
WACCRCAM
KTGYGGTW		 SELEX
Jolma et al.(2010)
RUNX3_monomer 		0.762 0.762
lz
M03964_2.00 		Drosophila melanogaster
HRACCGCAAHM
KDTTGCGGTYD		 SELEX
Nitta et al.(2015)
lz_1 		0.762 0.762
lz
M03965_2.00 		Drosophila melanogaster
HVACCRCARWAACCRCAV
BTGYGGTTWYTGYGGTBD		 SELEX
Nitta et al.(2015)
lz_2 		0.762 0.762
lz
M03966_2.00 		Drosophila melanogaster
WRACCRCAWTAACCRCAA
TTGYGGTTAWTGYGGTYW		 SELEX
Nitta et al.(2015)
lz_3 		0.762 0.762
lz
M03967_2.00 		Drosophila melanogaster
HRACCGCAAAACCRCAR
YTGYGGTTTTGCGGTYD		 SELEX
Nitta et al.(2015)
lz_4 		0.762 0.762
RUNX3
M05731_2.00 		Homo sapiens
YWAACCGCAAAAACCGCARV
BYTGCGGTTTTTGCGGTTWR		 SELEX
Yin et al.(2017)
RUNX3_FL_HT-SELEX 		0.762 0.762
RUNX3
M09369_2.00 		Homo sapiens
HAACCACARN
NYTGTGGTTD		 Misc
Kulakovskiy et al.(2013)
RUNX3_HUMAN.H11MO.0.A 		0.762 0.762
Runx3
M09374_2.00 		Mus musculus
NHRACCACARVN
NBYTGTGGTYDN		 Misc
Kulakovskiy et al.(2013)
RUNX3_MOUSE.H11MO.0.A 		0.762 0.762
RUNX3
M11252_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML2_Q3_01 		0.762 0.762
RUNX3
M11253_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML2_Q3 		0.762 0.762
RUNX3
M11254_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML2_Q4 		0.762 0.762
RUNX3
M05732_2.00 		Homo sapiens
HWAACCACRAAAACCACRARN
NYTYGTGGTTTTYGTGGTTWD		 SELEX
Yin et al.(2017)
RUNX3_FL_Methyl-HT-SELEX 		0.762 0.762
Runx1
M08163_2.00 		Mus musculus
HRRCCACARVN
NBYTGTGGYYD		 ChIP-seq
Mathelier et al.(2014)
MA0002.2 		0.754 0.754
RUNX1
M09371_2.00 		Homo sapiens
NWAACCACARV
BYTGTGGTTWN		 Misc
Kulakovskiy et al.(2013)
RUNX1_HUMAN.H11MO.0.A 		0.754 0.754
Runx1
M09372_2.00 		Mus musculus
VWRACCACARVV
BBYTGTGGTYWB		 Misc
Kulakovskiy et al.(2013)
RUNX1_MOUSE.H11MO.0.A 		0.754 0.754
RUNX1
M09632_2.00 		Homo sapiens
HAACCACADV
BHTGTGGTTD		 Misc
Heinz et al.(2010)
Jurkat-RUNX1_GSE29180 		0.754 0.754
RUNX1
M09631_2.00 		Homo sapiens
VCCACWTCCTBY
RVAGGAWGTGGB		 Misc
Heinz et al.(2010)
Jurkat-RUNX1_GSE17954 		0.754 0.754
Runx1
M09633_2.00 		Mus musculus
NWAACCACAR
YTGTGGTTWN		 Misc
Heinz et al.(2010)
HPC7-Runx1_GSE22178 		0.754 0.754
RUNX1
M11258_2.00 		Homo sapiens
ACCRCA
TGYGGT		 Transfac
Matys et al.(2006)
V$AML1_01 		0.754 0.754
RUNX1
M11259_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q4_01 		0.754 0.754
RUNX1
M11260_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q4_02 		0.754 0.754
RUNX1
M11261_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q4 		0.754 0.754
RUNX1
M11262_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q5 		0.754 0.754
RUNX1
M11263_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q6 		0.754 0.754
Runx2
M01307_2.00 		Mus musculus
NHDACCRCAN
NTGYGGTHDN		 PBM
Lambert et al.(2019)
pTH9764 		0.746 0.746
RUNX2
M03468_2.00 		Homo sapiens
HRACCGCAAACCRCRD
HYGYGGTTTGCGGTYD		 SELEX
Jolma et al.(2013)
RUNX2_1 		0.746 0.746
RUNX2
M03469_2.00 		Homo sapiens
HRACCRCADWWACCRCAD
HTGYGGTWWHTGYGGTYD		 SELEX
Jolma et al.(2013)
RUNX2_2 		0.746 0.746
RUNX2
M03470_2.00 		Homo sapiens
WAACCRCAR
YTGYGGTTW		 SELEX
Jolma et al.(2013)
RUNX2_3 		0.746 0.746
RUNX2
M05733_2.00 		Homo sapiens
NHRACCRCADWAACCRCAVN
NBTGYGGTTWHTGYGGTYDN		 SELEX
Yin et al.(2017)
RUNX2_eDBD_HT-SELEX 		0.746 0.746
RUNX2
M09370_2.00 		Homo sapiens
MMHAACCACAVVMH
DKBBTGTGGTTDKK		 Misc
Kulakovskiy et al.(2013)
RUNX2_HUMAN.H11MO.0.A 		0.746 0.746
Runx2
M09373_2.00 		Mus musculus
VWRACCACARVV
BBYTGTGGTYWB		 Misc
Kulakovskiy et al.(2013)
RUNX2_MOUSE.H11MO.0.A 		0.746 0.746
RUNX2
M09630_2.00 		Homo sapiens
NHVACCACANNN
NNNTGTGGTBDN		 Misc
Heinz et al.(2010)
PCa-RUNX2_GSE33889 		0.746 0.746
RUNX2
M11255_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML3_Q3 		0.746 0.746
RUNX2
M11256_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML3_Q6 		0.746 0.746
RUNX2
M11257_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$OSF2_Q6 		0.746 0.746
RUNX2
M05734_2.00 		Homo sapiens
NWAACCACRAAAACCACRRN
NYYGTGGTTTTYGTGGTTWN		 SELEX
Yin et al.(2017)
RUNX2_eDBD_Methyl-HT-SELEX 		0.746 0.746
run
M06444_2.00 		Drosophila melanogaster
WAACCGCAR
YTGCGGTTW		 B1H
Zhu et al.(2011)
run_Bgb_NBT_FBgn0003300 		0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
FBpp0279838 Runt 11 140

Links

Other Runt family TFs
Other Drosophila pseudoobscura TFs

291 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R004657 Calypte anna Aan_R004657 I 0.000
ACYPI005198 Acyrthosiphon pisum ACYPI005198 I 0.000
Afo_R002778 Aptenodytes forsteri Afo_R002778 I 0.000
Alligator_sinensis_CCG019430.1 Alligator sinensis Alligator_sinensis_CCG019430.1 I 0.000
Brh_R004607 Buceros rhinoceros Brh_R004607 I 0.000
Cmyd_10006239 Chelonia mydas Cmyd_10006239 I 0.000
EFV61981 Trichinella spiralis EFV61981 I 0.000
ENSAMEG00000005262 Ailuropoda melanoleuca ENSAMEG00000005262 I 0.000
ENSAMEG00000016108 Ailuropoda melanoleuca ENSAMEG00000016108 I 0.000
ENSAMXG00000004433 Astyanax mexicanus ENSAMXG00000004433 I 0.000
ENSAPLG00000004350 Anas platyrhynchos ENSAPLG00000004350 I 0.000
ENSBTAP00000048182-D1 Bos grunniens ENSBTAP00000048182-D1 I 0.000
ENSCPOG00000000336 Cavia porcellus ENSCPOG00000000336 I 0.000
ENSCPOG00000007162 Cavia porcellus ENSCPOG00000007162 I 0.000
ENSCSAG00000015119 Chlorocebus sabaeus ENSCSAG00000015119 I 0.000
ENSDORG00000001608 Dipodomys ordii ENSDORG00000001608 I 0.000
ENSFALG00000002308 Ficedula albicollis ENSFALG00000002308 I 0.000
ENSGACG00000018716 Gasterosteus aculeatus ENSGACG00000018716 I 0.000
ENSGMOG00000014798 Gadus morhua ENSGMOG00000014798 I 0.000
ENSLACG00000017438 Latimeria chalumnae ENSLACG00000017438 I 0.000
ENSLOCG00000012358 Lepisosteus oculatus ENSLOCG00000012358 I 0.000
ENSLOCG00000015320 Lepisosteus oculatus ENSLOCG00000015320 I 0.000
ENSMEUG00000013693 Macropus eugenii ENSMEUG00000013693 I 0.000
ENSMMUG00000010226 Macaca mulatta ENSMMUG00000010226 I 0.000
ENSMPUG00000002095 Mustela putorius furo ENSMPUG00000002095 I 0.000
ENSMPUG00000007107 Mustela putorius furo ENSMPUG00000007107 I 0.000
ENSNLEG00000010141 Nomascus leucogenys ENSNLEG00000010141 I 0.000
ENSNLEG00000015457 Nomascus leucogenys ENSNLEG00000015457 I 0.000
ENSOARG00000009456 Ovis aries ENSOARG00000009456 I 0.000
ENSOARG00000019742 Ovis aries ENSOARG00000019742 I 0.000
ENSONIG00000000432 Oreochromis niloticus ENSONIG00000000432 I 0.000
ENSONIG00000015871 Oreochromis niloticus ENSONIG00000015871 I 0.000
ENSONIG00000016308 Oreochromis niloticus ENSONIG00000016308 I 0.000
ENSP00000264444 Macaca fascicularis ENSP00000264444 I 0.000
ENSP00000264444-D1 Bos grunniens ENSP00000264444-D1 I 0.000
ENSP00000331152 Macaca fascicularis ENSP00000331152 I 0.000
ENSPANG00000000314 Papio anubis ENSPANG00000000314 I 0.000
ENSPANG00000020804 Papio anubis ENSPANG00000020804 I 0.000
ENSPFOG00000004367 Poecilia formosa ENSPFOG00000004367 I 0.000
ENSPFOG00000017086 Poecilia formosa ENSPFOG00000017086 I 0.000
ENSPFOG00000021922 Poecilia formosa ENSPFOG00000021922 I 0.000
ENSPMAG00000001074 Petromyzon marinus ENSPMAG00000001074 I 0.000
ENSPPYG00000012331 Pongo abelii ENSPPYG00000012331 I 0.000
ENSPSIG00000012742 Pelodiscus sinensis ENSPSIG00000012742 I 0.000
ENSSHAG00000005374 Sarcophilus harrisii ENSSHAG00000005374 I 0.000
ENSSTOG00000000718 Ictidomys tridecemlineatus ENSSTOG00000000718 I 0.000
ENSSTOG00000025776 Ictidomys tridecemlineatus ENSSTOG00000025776 I 0.000
ENSTBEG00000017602 Tupaia belangeri ENSTBEG00000017602 I 0.000
ENSTGUG00000010598 Taeniopygia guttata ENSTGUG00000010598 I 0.000
ENSTGUG00000015302 Taeniopygia guttata ENSTGUG00000015302 I 0.000
ENSTSYG00000006623 Tarsius syrichta ENSTSYG00000006623 I 0.000
ENSXMAG00000004566 Xiphophorus maculatus ENSXMAG00000004566 I 0.000
ENSXMAG00000007056 Xiphophorus maculatus ENSXMAG00000007056 I 0.000
ENSXMAG00000012758 Xiphophorus maculatus ENSXMAG00000012758 I 0.000
fgenesh2_pg.scaffold_205000025 Branchiostoma floridae fgenesh2_pg.scaffold_205000025 I 0.000
Gfo_R002259 Geospiza fortis Gfo_R002259 I 0.000
LotgiG220594 Lottia gigantea LotgiG220594 I 0.000
MXD1 Anolis carolinensis ENSACAG00000006004 I 0.000
MXD1 Bos taurus ENSBTAG00000001042 I 0.000
MXD1 Canis familiaris ENSCAFG00000032746 I 0.000
MXD1 Choloepus hoffmanni ENSCHOG00000003047 I 0.000
MXD1 Callithrix jacchus ENSCJAG00000019266 I 0.000
MXD1 Dasypus novemcinctus ENSDNOG00000034010 I 0.000
MXD1 Equus caballus ENSECAG00000011257 I 0.000
MXD1 Echinops telfairi ENSETEG00000017347 I 0.000
MXD1 Felis catus ENSFCAG00000030345 I 0.000
MXD1 Homo sapiens ENSG00000059728 I 0.000
mxd1 Gasterosteus aculeatus ENSGACG00000013215 I 0.000
MXD1 Gallus gallus ENSGALG00000013882 I 0.000
MXD1 Gorilla gorilla ENSGGOG00000011287 I 0.000
MXD1 Meleagris gallopavo ENSMGAG00000003405 I 0.000
MXD1 Monodelphis domestica ENSMODG00000011481 I 0.000
Mxd1 Mus musculus ENSMUSG00000001156 I 0.000
MXD1 Oryctolagus cuniculus ENSOCUG00000015820 I 0.000
MXD1 Otolemur garnettii ENSOGAG00000008412 I 0.000
mxd1 Oryzias latipes ENSORLG00000015461 I 0.000
MXD1 Procavia capensis ENSPCAG00000001189 I 0.000
MXD1 Pan troglodytes ENSPTRG00000012023 I 0.000
MXD1 Pteropus vampyrus ENSPVAG00000001244 I 0.000
Mxd1 Rattus norvegicus ENSRNOG00000017720 I 0.000
MXD1 Sorex araneus ENSSARG00000004728 I 0.000
MXD1 Sus scrofa ENSSSCG00000008334 I 0.000
MXD1 Tupaia belangeri ENSTBEG00000005535 I 0.000
mxd1 Tetraodon nigroviridis ENSTNIG00000000414 I 0.000
MXD1 Vicugna pacos ENSVPAG00000001762 I 0.000
MXI1 Anolis carolinensis ENSACAG00000006009 I 0.000
MXI1 Bos taurus ENSBTAG00000017263 I 0.000
MXI1 Canis familiaris ENSCAFG00000010706 I 0.000
MXI1 Choloepus hoffmanni ENSCHOG00000006556 I 0.000
MXI1 Callithrix jacchus ENSCJAG00000018614 I 0.000
MXI1 Cavia porcellus ENSCPOG00000022901 I 0.000
mxi1 Danio rerio ENSDARG00000040884 I 0.000
MXI1 Dasypus novemcinctus ENSDNOG00000002479 I 0.000
Mxi1 Dipodomys ordii ENSDORG00000005656 I 0.000
MXI1 Echinops telfairi ENSETEG00000018880 I 0.000
MXI1 Felis catus ENSFCAG00000004882 I 0.000
MXI1 Homo sapiens ENSG00000119950 D 0.000
MXI1 Gallus gallus ENSGALG00000008555 I 0.000
MXI1 Gorilla gorilla ENSGGOG00000013614 I 0.000
MXI1 Loxodonta africana ENSLAFG00000014348 I 0.000
MXI1 Meleagris gallopavo ENSMGAG00000010768 I 0.000
MXI1 Macaca mulatta ENSMMUG00000014350 I 0.000
MXI1 Monodelphis domestica ENSMODG00000010546 I 0.000
Mxi1 Mus musculus ENSMUSG00000025025 D 0.000
MXI1 Ornithorhynchus anatinus ENSOANG00000001600 I 0.000
MXI1 Otolemur garnettii ENSOGAG00000000570 I 0.000
MXI1 Oryzias latipes ENSORLG00000005955 I 0.000
mxi1 Oryzias latipes ENSORLG00000015172 I 0.000
MXI1 Procavia capensis ENSPCAG00000016142 I 0.000
MXI1 Pan troglodytes ENSPTRG00000002936 I 0.000
MXI1 Pteropus vampyrus ENSPVAG00000014983 I 0.000
Mxi1 Rattus norvegicus ENSRNOG00000034078 I 0.000
mxi1 Tetraodon nigroviridis ENSTNIG00000010585 I 0.000
MXI1 Tetraodon nigroviridis ENSTNIG00000013330 I 0.000
MXI1 Takifugu rubripes ENSTRUG00000006785 I 0.000
MXI1 Tursiops truncatus ENSTTRG00000007895 I 0.000
MXI1 Vicugna pacos ENSVPAG00000003400 I 0.000
mxi1 Xenopus tropicalis XB-GENE-493086 I 0.000
mxi1.L Xenopus laevis XB-GENE-865794 I 0.000
Myotis_brandtii_Mxi1_10027965 Myotis brandtii Myotis_brandtii_Mxi1_10027965 I 0.000
NV10716 Nasonia vitripennis NV10716 I 0.000
Ogr05439 Ophisaurus gracilis Ogr05439 I 0.000
Ogr11151 Ophisaurus gracilis Ogr11151 I 0.000
Pvit_06637 Pogona vitticeps Pvit_06637 I 0.000
Pvit_07222 Pogona vitticeps Pvit_07222 I 0.000
RPRC006485 Rhodnius prolixus RPRC006485 I 0.000
Sakowv30007563m.g Saccoglossus kowalevskii Sakowv30007563m.g I 0.000
SPU_006583 Strongylocentrotus purpuratus SPU_006583 I 0.000
Tal_R006513 Tyto alba Tal_R006513 I 0.000
tetur09g05570 Tetranychus urticae tetur09g05570 I 0.000