LDEC006650 (Leptinotarsa decemlineata)
Runt

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00853 (Runt) IPR013524 LDEC006650 T319696_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RUNX3
M03464_2.00 		Homo sapiens
HRACCGCAAACCRCAN
NTGYGGTTTGCGGTYD		 SELEX
Jolma et al.(2013)
RUNX3_1 		0.730 0.730
RUNX3
M03465_2.00 		Homo sapiens
WAACCRCARN
NYTGYGGTTW		 SELEX
Jolma et al.(2013)
RUNX3_2 		0.730 0.730
RUNX3
M03466_2.00 		Homo sapiens
HDACCRCADWAACCRCRN
NYGYGGTTWHTGYGGTHD		 SELEX
Jolma et al.(2013)
RUNX3_3 		0.730 0.730
RUNX3
M03467_2.00 		Homo sapiens
HRACCRCAAH
DTTGYGGTYD		 SELEX
Jolma et al.(2013)
RUNX3_4 		0.730 0.730
RUNX3
M02751_2.00 		Homo sapiens
WACCRCAM
KTGYGGTW		 SELEX
Jolma et al.(2010)
RUNX3_monomer 		0.730 0.730
RUNX3
M05731_2.00 		Homo sapiens
YWAACCGCAAAAACCGCARV
BYTGCGGTTTTTGCGGTTWR		 SELEX
Yin et al.(2017)
RUNX3_FL_HT-SELEX 		0.730 0.730
RUNX3
M09369_2.00 		Homo sapiens
HAACCACARN
NYTGTGGTTD		 Misc
Kulakovskiy et al.(2013)
RUNX3_HUMAN.H11MO.0.A 		0.730 0.730
Runx3
M09374_2.00 		Mus musculus
NHRACCACARVN
NBYTGTGGTYDN		 Misc
Kulakovskiy et al.(2013)
RUNX3_MOUSE.H11MO.0.A 		0.730 0.730
RUNX3
M11252_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML2_Q3_01 		0.730 0.730
RUNX3
M11253_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML2_Q3 		0.730 0.730
RUNX3
M11254_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML2_Q4 		0.730 0.730
RUNX3
M05732_2.00 		Homo sapiens
HWAACCACRAAAACCACRARN
NYTYGTGGTTTTYGTGGTTWD		 SELEX
Yin et al.(2017)
RUNX3_FL_Methyl-HT-SELEX 		0.730 0.730
Runx1
M08163_2.00 		Mus musculus
HRRCCACARVN
NBYTGTGGYYD		 ChIP-seq
Mathelier et al.(2014)
MA0002.2 		0.710 0.710
RUNX1
M09371_2.00 		Homo sapiens
NWAACCACARV
BYTGTGGTTWN		 Misc
Kulakovskiy et al.(2013)
RUNX1_HUMAN.H11MO.0.A 		0.710 0.710
Runx1
M09372_2.00 		Mus musculus
VWRACCACARVV
BBYTGTGGTYWB		 Misc
Kulakovskiy et al.(2013)
RUNX1_MOUSE.H11MO.0.A 		0.710 0.710
RUNX1
M09632_2.00 		Homo sapiens
HAACCACADV
BHTGTGGTTD		 Misc
Heinz et al.(2010)
Jurkat-RUNX1_GSE29180 		0.710 0.710
RUNX1
M09631_2.00 		Homo sapiens
VCCACWTCCTBY
RVAGGAWGTGGB		 Misc
Heinz et al.(2010)
Jurkat-RUNX1_GSE17954 		0.710 0.710
Runx1
M09633_2.00 		Mus musculus
NWAACCACAR
YTGTGGTTWN		 Misc
Heinz et al.(2010)
HPC7-Runx1_GSE22178 		0.710 0.710
RUNX1
M11258_2.00 		Homo sapiens
ACCRCA
TGYGGT		 Transfac
Matys et al.(2006)
V$AML1_01 		0.710 0.710
RUNX1
M11259_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q4_01 		0.710 0.710
RUNX1
M11260_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q4_02 		0.710 0.710
RUNX1
M11261_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q4 		0.710 0.710
RUNX1
M11262_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q5 		0.710 0.710
RUNX1
M11263_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q6 		0.710 0.710
Runx2
M01307_2.00 		Mus musculus
NHDACCRCAN
NTGYGGTHDN		 PBM
Lambert et al.(2019)
pTH9764 		0.700 0.700
RUNX2
M03468_2.00 		Homo sapiens
HRACCGCAAACCRCRD
HYGYGGTTTGCGGTYD		 SELEX
Jolma et al.(2013)
RUNX2_1 		0.700 0.700
RUNX2
M03469_2.00 		Homo sapiens
HRACCRCADWWACCRCAD
HTGYGGTWWHTGYGGTYD		 SELEX
Jolma et al.(2013)
RUNX2_2 		0.700 0.700
RUNX2
M03470_2.00 		Homo sapiens
WAACCRCAR
YTGYGGTTW		 SELEX
Jolma et al.(2013)
RUNX2_3 		0.700 0.700
RUNX2
M05733_2.00 		Homo sapiens
NHRACCRCADWAACCRCAVN
NBTGYGGTTWHTGYGGTYDN		 SELEX
Yin et al.(2017)
RUNX2_eDBD_HT-SELEX 		0.700 0.700
RUNX2
M09370_2.00 		Homo sapiens
MMHAACCACAVVMH
DKBBTGTGGTTDKK		 Misc
Kulakovskiy et al.(2013)
RUNX2_HUMAN.H11MO.0.A 		0.700 0.700
Runx2
M09373_2.00 		Mus musculus
VWRACCACARVV
BBYTGTGGTYWB		 Misc
Kulakovskiy et al.(2013)
RUNX2_MOUSE.H11MO.0.A 		0.700 0.700
RUNX2
M09630_2.00 		Homo sapiens
NHVACCACANNN
NNNTGTGGTBDN		 Misc
Heinz et al.(2010)
PCa-RUNX2_GSE33889 		0.700 0.700
RUNX2
M11255_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML3_Q3 		0.700 0.700
RUNX2
M11256_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML3_Q6 		0.700 0.700
RUNX2
M11257_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$OSF2_Q6 		0.700 0.700
RUNX2
M05734_2.00 		Homo sapiens
NWAACCACRAAAACCACRRN
NYYGTGGTTTTYGTGGTTWN		 SELEX
Yin et al.(2017)
RUNX2_eDBD_Methyl-HT-SELEX 		0.700 0.700
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
LDEC006650-PA Runt 41 140

Links

Other Runt family TFs
Other Leptinotarsa decemlineata TFs

209 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29842.m003704 Ricinus communis 29842.m003704 N 0.000
BGIOSGA000686 Oryza indica BGIOSGA000686 N 0.000
BGIOSGA020126 Oryza indica BGIOSGA020126 N 0.000
BGIOSGA020128 Oryza indica BGIOSGA020128 N 0.000
cassava13240.valid.m1 Manihot esculenta cassava13240.valid.m1 N 0.000
cassava19346.valid.m1 Manihot esculenta cassava19346.valid.m1 N 0.000
Ca_00214 Cicer arietinum Ca_00214 N 0.000
Eucgr.E03614 Eucalyptus grandis Eucgr.E03614 N 0.000
evm.TU.supercontig_27.162 Carica papaya evm.TU.supercontig_27.162 N 0.000
gene30665-v1.0-hybrid Fragaria vesca gene30665-v1.0-hybrid N 0.000
GLYMA13G32320 Glycine max GLYMA13G32320 N 0.000
GLYMA15G07010 Glycine max GLYMA15G07010 N 0.000
Gorai.009G175300 Gossypium raimondii Gorai.009G175300 N 0.000
Gorai.010G147100 Gossypium raimondii Gorai.010G147100 N 0.000
Gorai.011G020100 Gossypium raimondii Gorai.011G020100 N 0.000
GRMZM2G440529 Zea mays GRMZM2G440529 N 0.000
GSMUA_Achr4G33630_001 Musa acuminata GSMUA_Achr4G33630_001 N 0.000
LPERR01G28830 Leersia perrieri LPERR01G28830 N 0.000
Lus10007613.g Linum usitatissimum Lus10007613.g N 0.000
Lus10018400.g Linum usitatissimum Lus10018400.g N 0.000
MDP0000301999 Malus domestica MDP0000301999 N 0.000
mgf016565m Mimulus guttatus mgf016565m N 0.000
MTR_2g011070 Medicago truncatula MTR_2g011070 N 0.000
OB05G29420 Oryza brachyantha OB05G29420 N 0.000
OBART01G33360 Oryza barthii OBART01G33360 N 0.000
OBART05G21860 Oryza barthii OBART05G21860 N 0.000
OGLUM01G37590 Oryza glumaepatula OGLUM01G37590 N 0.000
OGLUM05G23050 Oryza glumaepatula OGLUM05G23050 N 0.000
OLONG_006510 Oryza longistaminata OLONG_006510 N 0.000
OMERI01G30260 Oryza meridionalis OMERI01G30260 N 0.000
OMERI12G12400 Oryza meridionalis OMERI12G12400 N 0.000
ONIVA01G38120 Oryza nivara ONIVA01G38120 N 0.000
ONIVA05G22530 Oryza nivara ONIVA05G22530 N 0.000
OPUNC01G32440 Oryza punctata OPUNC01G32440 N 0.000
ORGLA05G0190400 Oryza glaberrima ORGLA05G0190400 N 0.000
ORUFI01G36520 Oryza rufipogon ORUFI01G36520 N 0.000
ORUFI05G23130 Oryza rufipogon ORUFI05G23130 N 0.000
Pavir.Ea03112 Panicum virgatum Pavir.Ea03112 N 0.000
Pavir.Eb03429 Panicum virgatum Pavir.Eb03429 N 0.000
PGSC0003DMG400013875 Solanum tuberosum PGSC0003DMG400013875 N 0.000
PK14284.1 Cannabis sativa PK14284.1 N 0.000
Pm009855 Prunus mume Pm009855 N 0.000
POPTR_0004s02870 Populus trichocarpa POPTR_0004s02870 N 0.000
POPTR_0011s03560 Populus trichocarpa POPTR_0011s03560 N 0.000
PRUPE_ppa005924mg Prunus persica PRUPE_ppa005924mg N 0.000
SapurV1A.0028s0510 Salix purpurea SapurV1A.0028s0510 N 0.000
SapurV1A.1304s0050 Salix purpurea SapurV1A.1304s0050 N 0.000
Sb03g036670 Sorghum bicolor Sb03g036670 N 0.000
Si001796m.g Setaria italica Si001796m.g N 0.000
Solyc02g079760.2 Solanum lycopersicum Solyc02g079760.2 N 0.000
TCM_030051 Theobroma cacao TCM_030051 N 0.000
VIT_00s0274g00070 Vitis vinifera VIT_00s0274g00070 N 0.000