CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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scaffold962-EXSNAP2012.8
(
Pristionchus exspectatus
)
Runt
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00853 (Runt)
IPR013524
scaffold962-EXSNAP2012.8
T319844_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
scaffold962-EXSNAP2012.8
Runt
8
137
RAALRDAPPAKYIPTENPYIVCSQLPAHWRCNKSLPDPLLVLLLIPIPNGTQVSVSAANDENPCGEVRNATAVVRNQMAKFNDLRFIGKSGRGKSFHITITVHSTPIHIGTINKAIKVTVDGPRDARHKK
Links
Other
Runt
family TFs
Other
Pristionchus exspectatus
TFs
3 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
F443_20988
Phytophthora parasitica
F443_20988
N
gw1.165.16.1
Phytophthora capsici
gw1.165.16.1
N
maker-par_contig_2046-fgenesh-gene-0.1
Pythium arrhenomanes
maker-par_contig_2046-fgenesh-gene-0.1
N
maker-pve_contig_67-fgenesh-gene-0.24
Pythium vexans
maker-pve_contig_67-fgenesh-gene-0.24
N
Physo130750
Phytophthora sojae
Physo130750
N
PITG_15785
Phytophthora infestans
PITG_15785
N