Al_scaffold_0005_2880 (Arabidopsis lyrata)
RWP-RK

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02042 (RWP-RK) IPR003035 Al_scaffold_0005_2880 T319881_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
NLP7
M07251_2.00 		Arabidopsis thaliana
WNDTGNCYYTTSRDD
HHYSAARRGNCAHNW		 Dap-seq
OMalley et al.(2016)
NLP7_col_a 		0.857 0.857
NLP4
M07248_2.00 		Arabidopsis thaliana
NNHNNBTGCTGYHNN
NNDRCAGCAVNNDNN		 Dap-seq
OMalley et al.(2016)
AtNLP4_col_b 		0.796 0.796
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Al_scaffold_0005_2880 RWP-RK 524 572

Links

Other RWP-RK family TFs
Other Arabidopsis lyrata TFs

414 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
CBG11680 Caenorhabditis briggsae CBG11680 I 0.000
CBG13574 Caenorhabditis briggsae CBG13574 I 0.000
CBN06713 Caenorhabditis brenneri CBN06713 I 0.000
CRE20001 Caenorhabditis remanei CRE20001 I 0.000
nhr-104 Caenorhabditis elegans WBGene00003694 I 0.000
nhr-122 Caenorhabditis elegans WBGene00003712 D 0.000