fgenesh1_pg.C_scaffold_8002648 (Arabidopsis lyrata)
RWP-RK

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02042 (RWP-RK) IPR003035 fgenesh1_pg.C_scaffold_8002648 T320037_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RKD2
M07249_2.00 		Arabidopsis thaliana
NHGWCBNTTCRDCTTCYHN
NDRGAAGHYGAANVGWCDN		 Dap-seq
OMalley et al.(2016)
RKD2_col_a 		0.714 0.714
RKD2
M07250_2.00 		Arabidopsis thaliana
GWCBBTTCRDMTTCC
GGAAKHYGAAVVGWC		 Dap-seq
OMalley et al.(2016)
RKD2_colamp_a 		0.714 0.714
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh1_pg.C_scaffold_8002648 RWP-RK 154 202

Links

Other RWP-RK family TFs
Other Arabidopsis lyrata TFs

70 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AGABI2DRAFT_189484 Agaricus bisporus AGABI2DRAFT_189484 N 0.000
BN946_scf185007.g88 Trametes cinnabarina BN946_scf185007.g88 N 0.000
CC1G_06624 Coprinopsis cinerea CC1G_06624 N 0.000
CERSUDRAFT_110826 Ceriporiopsis subvermispora CERSUDRAFT_110826 N 0.000
CY34DRAFT_21326 Suillus luteus CY34DRAFT_21326 N 0.000
estExt_Genewise1Plus.C_10574 Heterobasidion annosum estExt_Genewise1Plus.C_10574 N 0.000
fgenesh1_pg.C_scaffold_13000227 Phanerochaete chrysosporium fgenesh1_pg.C_scaffold_13000227 N 0.000
FOMPIDRAFT_1022414 Fomitopsis pinicola FOMPIDRAFT_1022414 N 0.000
GALMADRAFT_234645 Galerina marginata GALMADRAFT_234645 N 0.000
GLOTRDRAFT_32332 Gloeophyllum trabeum GLOTRDRAFT_32332 N 0.000
HETIRDRAFT_58809 Heterobasidion irregulare HETIRDRAFT_58809 N 0.000
JAAARDRAFT_29212 Jaapia argillacea JAAARDRAFT_29212 N 0.000
LACBIDRAFT_320896 Laccaria bicolor LACBIDRAFT_320896 N 0.000
M378DRAFT_65406 Amanita muscaria M378DRAFT_65406 N 0.000
M404DRAFT_998367 Pisolithus tinctorius M404DRAFT_998367 N 0.000
M413DRAFT_62953 Hebeloma cylindrosporum M413DRAFT_62953 N 0.000
Moror_4814 Moniliophthora roreri Moror_4814 N 0.000
PAXRUDRAFT_22985 Paxillus rubicundulus PAXRUDRAFT_22985 N 0.000
PHACADRAFT_248056 Phanerochaete carnosa PHACADRAFT_248056 N 0.000
PHLGIDRAFT_439130 Phlebiopsis gigantea PHLGIDRAFT_439130 N 0.000
PILCRDRAFT_85396 Piloderma croceum PILCRDRAFT_85396 N 0.000
SCLCIDRAFT_503769 Scleroderma citrinum SCLCIDRAFT_503769 N 0.000
SERLA73DRAFT_163673 Serpula lacrymans SERLA73DRAFT_163673 N 0.000