Carubv10019812m.g (Capsella rubella)
RWP-RK

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02042 (RWP-RK) IPR003035 Carubv10019812m.g T321097_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
NLP4
M07248_2.00 		Arabidopsis thaliana
NNHNNBTGCTGYHNN
NNDRCAGCAVNNDNN		 Dap-seq
OMalley et al.(2016)
AtNLP4_col_b 		0.939 0.939
NLP7
M07251_2.00 		Arabidopsis thaliana
WNDTGNCYYTTSRDD
HHYSAARRGNCAHNW		 Dap-seq
OMalley et al.(2016)
NLP7_col_a 		0.837 0.837
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10019812m RWP-RK 549 597

Links

Other RWP-RK family TFs
Other Capsella rubella TFs

415 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACLA_098580 Aspergillus clavatus CADACLAG00009113 N 0.000
ANIA_08666 Aspergillus nidulans CADANIAG00006379 N 0.000
ATEG_07265 Aspergillus terreus CADATEAG00003627 N 0.000
BDDG_09840 Blastomyces dermatitidis BDDG_09840 N 0.000
CADANGAG00010337 Aspergillus niger CADANGAG00010337 N 0.000
CIMG_09999 Coccidioides immitis CIMG_09999 N 0.000
CPC735_011650 Coccidioides posadasii CPC735_011650 N 0.000
EURHEDRAFT_460941 Aspergillus ruber EURHEDRAFT_460941 N 0.000
e_gw1.00169.1.1 Aspergillus carbonarius e_gw1.00169.1.1 N 0.000
H102_08817 Trichophyton rubrum H102_08817 N 0.000
H105_08842 Trichophyton soudanense H105_08842 N 0.000
HCBG_02942 Histoplasma capsulatum HCBG_02942 N 0.000
MCYG_02975 Microsporum canis MCYG_02975 N 0.000
MCYG_02975 Arthroderma otae MCYG_02975 N 0.000
NFIA_048150 Neosartorya fischeri CADNFIAG00004366 N 0.000
PAAG_04477 Paracoccidioides sp lutzii PAAG_04477 N 0.000
PABG_04267 Paracoccidioides brasiliensis PABG_04267 N 0.000
Pc22g24500 Penicillium chrysogenum Pc22g24500 N 0.000
PCH_Pc22g24500 Penicillium rubens PCH_Pc22g24500 N 0.000
PDE_03331 Penicillium oxalicum PDE_03331 N 0.000
PITC_054260 Penicillium italicum PITC_054260 N 0.000
PMAA_093440 Talaromyces marneffei PMAA_093440 N 0.000
PMAA_093440 Penicillium marneffei PMAA_093440 N 0.000
PVAR5_7535 Byssochlamys spectabilis PVAR5_7535 N 0.000
TEQG_06658 Trichophyton equinum TEQG_06658 N 0.000
TSTA_047890 Talaromyces stipitatus TSTA_047890 N 0.000
U727_00431231441 Penicillium solitum U727_00431231441 N 0.000
UREG_06021 Uncinocarpus reesii UREG_06021 N 0.000
W97_05488 Coniosporium apollinis W97_05488 N 0.000