Pavir.Ab02992 (Panicum virgatum)
RWP-RK

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02042 (RWP-RK) IPR003035 Pavir.Ab02992 T321215_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RKD2
M07249_2.00 		Arabidopsis thaliana
NHGWCBNTTCRDCTTCYHN
NDRGAAGHYGAANVGWCDN		 Dap-seq
OMalley et al.(2016)
RKD2_col_a 		0.735 0.735
RKD2
M07250_2.00 		Arabidopsis thaliana
GWCBBTTCRDMTTCC
GGAAKHYGAAVVGWC		 Dap-seq
OMalley et al.(2016)
RKD2_colamp_a 		0.735 0.735
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ab02992.1.p RWP-RK 42 90

Links

Other RWP-RK family TFs
Other Panicum virgatum TFs

93 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R002989 Calypte anna Aan_R002989 I 0.000
Afo_R005152 Aptenodytes forsteri Afo_R005152 I 0.000
Brh_R005181 Buceros rhinoceros Brh_R005181 I 0.000
Cmyd_10016913 Chelonia mydas Cmyd_10016913 I 0.000
ENSAMEG00000008602 Ailuropoda melanoleuca ENSAMEG00000008602 I 0.000
ENSAPLG00000004604 Anas platyrhynchos ENSAPLG00000004604 I 0.000
ENSCSAG00000013321 Chlorocebus sabaeus ENSCSAG00000013321 I 0.000
ENSFALG00000008622 Ficedula albicollis ENSFALG00000008622 I 0.000
ENSGALG00000015755 Gallus gallus ENSGALG00000015755 I 0.000
ENSMLUG00000030610 Myotis lucifugus ENSMLUG00000030610 I 0.000
ENSMPUG00000001817 Mustela putorius furo ENSMPUG00000001817 I 0.000
ENSNLEG00000002414 Nomascus leucogenys ENSNLEG00000002414 I 0.000
ENSP00000331462 Macaca fascicularis ENSP00000331462 I 0.000
ENSPANG00000026084 Papio anubis ENSPANG00000026084 I 0.000
ENSPPYG00000018697 Pongo abelii ENSPPYG00000018697 I 0.000
ENSPSIG00000013514 Pelodiscus sinensis ENSPSIG00000013514 I 0.000
ENSSHAG00000015448 Sarcophilus harrisii ENSSHAG00000015448 I 0.000
ENSSTOG00000029111 Ictidomys tridecemlineatus ENSSTOG00000029111 I 0.000
ENSTSYG00000000030 Tarsius syrichta ENSTSYG00000000030 I 0.000
Gfo_R007548 Geospiza fortis Gfo_R007548 I 0.000
Myotis_brandtii_ZNF704_10021364 Myotis brandtii Myotis_brandtii_ZNF704_10021364 I 0.000
Tal_R002467 Tyto alba Tal_R002467 I 0.000
Zfp704 Dipodomys ordii ENSDORG00000001781 I 0.000
ZNF704 Taeniopygia guttata ENSTGUG00000011648 I 0.000
ZNF704 Canis familiaris ENSCAFG00000008422 I 0.000
ZNF704 Choloepus hoffmanni ENSCHOG00000011865 I 0.000
ZNF704 Callithrix jacchus ENSCJAG00000000453 I 0.000
ZNF704 Cavia porcellus ENSCPOG00000012507 I 0.000
ZNF704 Dasypus novemcinctus ENSDNOG00000019259 I 0.000
ZNF704 Echinops telfairi ENSETEG00000005617 I 0.000
ZNF704 Felis catus ENSFCAG00000014606 I 0.000
ZNF704 Vicugna pacos ENSVPAG00000001138 I 0.000
ZNF704 Homo sapiens ENSG00000164684 D 0.000
ZNF704 Otolemur garnettii ENSOGAG00000008748 I 0.000
ZNF704 Tupaia belangeri ENSTBEG00000007241 I 0.000
ZNF704 Gorilla gorilla ENSGGOG00000008615 I 0.000
ZNF704 Sus scrofa ENSSSCG00000022989 I 0.000
ZNF704 Loxodonta africana ENSLAFG00000029007 I 0.000
ZNF704 Pan troglodytes ENSPTRG00000020370 I 0.000
ZNF704 Meleagris gallopavo ENSMGAG00000011640 I 0.000
ZNF704 Macaca mulatta ENSMMUG00000009969 I 0.000
ZNF704 Procavia capensis ENSPCAG00000014926 I 0.000
ZNF704 Ornithorhynchus anatinus ENSOANG00000006669 I 0.000