Pavir.J12574 (Panicum virgatum)
RWP-RK

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02042 (RWP-RK) IPR003035 Pavir.J12574 T321230_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
NLP7
M07251_2.00 		Arabidopsis thaliana
WNDTGNCYYTTSRDD
HHYSAARRGNCAHNW		 Dap-seq
OMalley et al.(2016)
NLP7_col_a 		0.878 0.878
NLP4
M07248_2.00 		Arabidopsis thaliana
NNHNNBTGCTGYHNN
NNDRCAGCAVNNDNN		 Dap-seq
OMalley et al.(2016)
AtNLP4_col_b 		0.776 0.776
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J12574.1.p RWP-RK 79 127

Links

Other RWP-RK family TFs
Other Panicum virgatum TFs

413 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AAEL012562 Aedes aegypti AAEL012562 N
AALB004151 Anopheles albimanus AALB004151 N
AARA005712 Anopheles arabiensis AARA005712 N
AATE001068 Anopheles atroparvus AATE001068 N
ACEP20954 Atta cephalotes ACEP20954 I
ACHR008870 Anopheles christyi ACHR008870 N
ACOM031194 Anopheles coluzzii ACOM031194 N
ACUA003634 Anopheles culicifacies ACUA003634 N
ADAC005680 Anopheles darlingi ADAC005680 N
ADIR007538 Anopheles dirus ADIR007538 N
AEPI008163 Anopheles epiroticus AEPI008163 N
AFAF004824 Anopheles farauti AFAF004824 N
AFUN011810 Anopheles funestus AFUN011810 N
AMEC012294 Anopheles melas AMEC012294 N
AMEM015248 Anopheles merus AMEM015248 N
AMIN011013 Anopheles minimus AMIN011013 N
AQUA011172 Anopheles quadriannulatus AQUA011172 N
ASTEI06385 Anopheles stephensi ASTEI06385 N
Cflo_02744--XP_394233.3_APIME Camponotus floridanus Cflo_02744--XP_394233.3_APIME I
CLEC000211 Cimex lectularius CLEC000211 I
CLK Anopheles gambiae AGAP005711 N
Clk Drosophila melanogaster FBgn0023076 D
CPIJ002146 Culex quinquefasciatus CPIJ002146 N
CpipJ_CPIJ002146 Culex pipiens CpipJ_CPIJ002146 N
DAPPUDRAFT_346996 Daphnia pulex DAPPUDRAFT_346996 I
GA20318 Drosophila pseudoobscura FBgn0080313 I
GB48028 Apis mellifera GB48028 I
GD13034 Drosophila simulans FBgn0184756 I
GE20390 Drosophila yakuba FBgn0237706 I
GF24152 Drosophila ananassae FBgn0101146 I
GG14938 Drosophila erecta FBgn0107192 I
GH16514 Drosophila grimshawi FBgn0123985 I
GI12195 Drosophila mojavensis FBgn0134952 I
GK10694 Drosophila willistoni FBgn0212707 I
GL17825 Drosophila persimilis FBgn0155428 I
GM24989 Drosophila sechellia FBgn0179850 I
HHAL003628-PA Halyomorpha halys HHAL003628-PA I
HMEL008784 Heliconius melpomene HMEL008784 I
Hsal_05831--XP_394233.3_APIME Harpegnathos saltator Hsal_05831--XP_394233.3_APIME I
KGM_10878 Danaus plexippus KGM_10878 I
MCINX000525 Melitaea cinxia MCINX000525 I
PHUM426300 Pediculus humanus PHUM426300 I
PPAI002844 Phlebotomus papatasi PPAI002844 I
RPRC002110 Rhodnius prolixus RPRC002110 I
TC000088 Tribolium castaneum TC000088 I
YQE_03736 Dendroctonus ponderosae YQE_03736 I