chr4.CM0087.990.nc (Lotus japonicus)
RWP-RK

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02042 (RWP-RK) IPR003035 chr4.CM0087.990.nc T321300_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RKD2
M07249_2.00 		Arabidopsis thaliana
NHGWCBNTTCRDCTTCYHN
NDRGAAGHYGAANVGWCDN		 Dap-seq
OMalley et al.(2016)
RKD2_col_a 		0.816 0.816
RKD2
M07250_2.00 		Arabidopsis thaliana
GWCBBTTCRDMTTCC
GGAAKHYGAAVVGWC		 Dap-seq
OMalley et al.(2016)
RKD2_colamp_a 		0.816 0.816
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
chr4.CM0087.990.nc RWP-RK 140 188

Links

Other RWP-RK family TFs
Other Lotus japonicus TFs

75 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F443_04245 Phytophthora parasitica F443_04245 N
fgenesh_masked-piw_contig_2465-abinit-gene-0.3 Pythium iwayamai fgenesh_masked-piw_contig_2465-abinit-gene-0.3 N
fgenesh_scip_prom.28083.3669 Phytophthora lateralis fgenesh_scip_prom.28083.3669 N
fgenesh_scip_prom.46568.5994 Phytophthora kernoviae fgenesh_scip_prom.46568.5994 N
HpaG801013 Hyaloperonospora arabidopsidis HpaG801013 N
HpaG811874 Hyaloperonospora arabidopsidis HpaG811874 N
maker-pag1_scaffold_4-snap-gene-0.57 Pythium aphanidermatum maker-pag1_scaffold_4-snap-gene-0.57 N
maker-pve_contig_182-fgenesh-gene-0.7 Pythium vexans maker-pve_contig_182-fgenesh-gene-0.7 N
Phyra72797 Phytophthora ramorum Phyra72797 N
Physo142553 Phytophthora sojae Physo142553 N
PITG_00514 Phytophthora infestans PITG_00514 N
PYU1_G004133 Pythium ultimum PYU1_G004133 N