SPL9 (Arabidopsis lyrata)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03110 (SBP) IPR004333 scaffold_403069.1 T323012_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SPL9
M01308_2.00 		Arabidopsis thaliana
NGTACKDNN
NNHMGTACN		 PBM
Lambert et al.(2019)
pTH11560 		0.976 0.987
SPL9
M07257_2.00 		Arabidopsis thaliana
NNYGTACKKHH
DDMMGTACRNN		 Dap-seq
OMalley et al.(2016)
SPL9_col_a 		0.976 0.987
SPL9
M07258_2.00 		Arabidopsis thaliana
NDNTGTACGGA
TCCGTACANHN		 Dap-seq
OMalley et al.(2016)
SPL9_colamp_a 		0.976 0.987
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
scaffold_403069.1 SBP 73 147

Links

Other SBP family TFs
Other Arabidopsis lyrata TFs

39 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Eucgr.B00713 Eucalyptus grandis Eucgr.B00713 I
MDP0000137325 Malus domestica MDP0000137325 I
MDP0000140864 Malus domestica MDP0000140864 N
MDP0000183948 Malus domestica MDP0000183948 I
MDP0000442310 Malus domestica MDP0000442310 I
MDP0000710285 Malus domestica MDP0000710285 I
MDP0000788304 Malus domestica MDP0000788304 N
MDP0000907218 Malus domestica MDP0000907218 N
Pm023735 Prunus mume Pm023735 I
Pm023738 Prunus mume Pm023738 I
Pm028604 Prunus mume Pm028604 I
Pm028605 Prunus mume Pm028605 I
Pm028606 Prunus mume Pm028606 I
Pm028607 Prunus mume Pm028607 I
PRUPE_ppa015634mg Prunus persica PRUPE_ppa015634mg I
PRUPE_ppa016220mg Prunus persica PRUPE_ppa016220mg I
PRUPE_ppa022165mg Prunus persica PRUPE_ppa022165mg I
PRUPE_ppa022201mg Prunus persica PRUPE_ppa022201mg I
PRUPE_ppa025417mg Prunus persica PRUPE_ppa025417mg I
PRUPE_ppa027182mg Prunus persica PRUPE_ppa027182mg I