Cagra.8874s0008 (Capsella grandiflora)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03110 (SBP) IPR004333 Cagra.8874s0008 T323409_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SPL11
M02471_2.00 		Arabidopsis thaliana
NNNHGTACGGWN
NWCCGTACDNNN		 PBM
Weirauch et al.(2014)
pTH9392 		0.983 0.933
SPL11
M07254_2.00 		Arabidopsis thaliana
HTGTACTDDHH
DDHHAGTACAD		 Dap-seq
OMalley et al.(2016)
SPL11_col100_a 		0.983 0.933
SPL10
M01084_2.00 		Arabidopsis thaliana
NNGTACGRHN
NDYCGTACNN		 PBM
Sullivan et al.(2014)
pTH9749 		0.977 0.933
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.8874s0008.1.p SBP 176 250
Cagra.8874s0008.2.p SBP 176 250
Cagra.8874s0008.3.p SBP 139 213
Cagra.8874s0008.4.p SBP 139 213

Links

Other SBP family TFs
Other Capsella grandiflora TFs

33 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aquca_001_00211 Aquilegia coerulea Aquca_001_00211 I
Bostr.15697s0168 Boechera stricta Bostr.15697s0168 I
Ca_05913 Cicer arietinum Ca_05913 I
Ciclev10010579m.g Citrus clementina Ciclev10010579m.g I
Cla017075 Citrullus lanatus Cla017075 I
Cucsa.116800 Cucumis sativus Cucsa.116800 I
MTR_8g102240 Medicago truncatula MTR_8g102240 I
orange1.1g012118m.g Citrus sinensis orange1.1g012118m.g I
PK11990.1 Cannabis sativa PK11990.1 D