SIGD (Arabidopsis thaliana)
Sigma 70

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF04542 (Sigma70_r2) IPR007627 AT5G13730 T323757_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
AT5G13730.1 Sigma 70 183 253

Links

Other Sigma 70 family TFs
Other Arabidopsis thaliana TFs

34 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29631.m001056 Ricinus communis 29631.m001056 I 0.000
30170.m013647 Ricinus communis 30170.m013647 I 0.000
AMTR_s00085p00165180 Amborella trichopoda AMTR_s00085p00165180 I 0.000
Aquca_002_00078 Aquilegia coerulea Aquca_002_00078 I 0.000
Aquca_032_00056 Aquilegia coerulea Aquca_032_00056 I 0.000
Aquca_133_00021 Aquilegia coerulea Aquca_133_00021 I 0.000
Bo3g043050 Brassica oleracea Bo3g043050 I 0.000
Bostr.3877s0047 Boechera stricta Bostr.3877s0047 I 0.000
Bra000638 Brassica rapa Bra000638 I 0.000
BRADI1G12677 Brachypodium distachyon BRADI1G12677 I 0.000
BRADI1G57607 Brachypodium distachyon BRADI1G57607 I 0.000
Cagra.7524s0001 Capsella grandiflora Cagra.7524s0001 I 0.000
Carubv10002748m.g Capsella rubella Carubv10002748m.g I 0.000
cassava22394.valid.m1 Manihot esculenta cassava22394.valid.m1 I 0.000
cassava23924.valid.m1 Manihot esculenta cassava23924.valid.m1 I 0.000
cassava35932.valid.m1 Manihot esculenta cassava35932.valid.m1 I 0.000
Ca_09202 Cicer arietinum Ca_09202 I 0.000
Ca_18152 Cicer arietinum Ca_18152 I 0.000
Ciclev10001508m.g Citrus clementina Ciclev10001508m.g I 0.000
Ciclev10015818m.g Citrus clementina Ciclev10015818m.g I 0.000
Ciclev10022781m.g Citrus clementina Ciclev10022781m.g I 0.000
Cla021211 Citrullus lanatus Cla021211 I 0.000
Cla023003 Citrullus lanatus Cla023003 I 0.000
Cucsa.196810 Cucumis sativus Cucsa.196810 N 0.000
Cucsa.353140 Cucumis sativus Cucsa.353140 I 0.000
Cucsa.395320 Cucumis sativus Cucsa.395320 I 0.000
Eucgr.F00106 Eucalyptus grandis Eucgr.F00106 I 0.000
Eucgr.H02544 Eucalyptus grandis Eucgr.H02544 I 0.000
evm.TU.supercontig_69.81 Carica papaya evm.TU.supercontig_69.81 I 0.000
F775_14143 Aegilops tauschii F775_14143 I 0.000
F775_31062 Aegilops tauschii F775_31062 I 0.000
gene32207-v1.0-hybrid Fragaria vesca gene32207-v1.0-hybrid I 0.000
GLYMA0041S00360 Glycine max GLYMA0041S00360 I 0.000
GLYMA01G03450 Glycine max GLYMA01G03450 I 0.000
GLYMA02G04190 Glycine max GLYMA02G04190 I 0.000
GLYMA04G35850 Glycine max GLYMA04G35850 I 0.000
GLYMA14G10430 Glycine max GLYMA14G10430 I 0.000
Gorai.005G180500 Gossypium raimondii Gorai.005G180500 I 0.000
Gorai.009G223200 Gossypium raimondii Gorai.009G223200 I 0.000
Gorai.010G029000 Gossypium raimondii Gorai.010G029000 I 0.000
GRMZM2G017087 Zea mays GRMZM2G017087 I 0.000
GRMZM2G028041 Zea mays GRMZM2G028041 I 0.000
GSMUA_Achr10G28700_001 Musa acuminata GSMUA_Achr10G28700_001 I 0.000
GSMUA_Achr2G13200_001 Musa acuminata GSMUA_Achr2G13200_001 I 0.000
GSMUA_Achr3G26230_001 Musa acuminata GSMUA_Achr3G26230_001 I 0.000
GSMUA_Achr4G28270_001 Musa acuminata GSMUA_Achr4G28270_001 I 0.000
GSMUA_Achr6G04640_001 Musa acuminata GSMUA_Achr6G04640_001 I 0.000
GSMUA_Achr7G08050_001 Musa acuminata GSMUA_Achr7G08050_001 I 0.000
GSMUA_Achr7G27540_001 Musa acuminata GSMUA_Achr7G27540_001 I 0.000
KNAT1 Arabidopsis thaliana AT4G08150 I 0.000
KNAT1 Arabidopsis lyrata fgenesh2_kg.6__2861__AT4G08150.1 I 0.000
KNOX3_HORVU Hordeum vulgare KNOX3_HORVU D 0.000
LPERR03G27340 Leersia perrieri LPERR03G27340 I 0.000
LPERR07G01870 Leersia perrieri LPERR07G01870 I 0.000
Lus10013037.g Linum usitatissimum Lus10013037.g I 0.000
Lus10029125.g Linum usitatissimum Lus10029125.g I 0.000
MDP0000254187 Malus domestica MDP0000254187 I 0.000
MDP0000280307 Malus domestica MDP0000280307 I 0.000
mgf024741m Mimulus guttatus mgf024741m I 0.000
MLOC_11678 Hordeum vulgare MLOC_11678 I 0.000
MTR_1g017080 Medicago truncatula MTR_1g017080 I 0.000
MTR_5g033720 Medicago truncatula MTR_5g033720 I 0.000
OB03G39780 Oryza brachyantha OB03G39780 I 0.000
OB07G11590 Oryza brachyantha OB07G11590 I 0.000
OBART03G32690 Oryza barthii OBART03G32690 I 0.000
OBART07G01880 Oryza barthii OBART07G01880 I 0.000
OGLUM03G32330 Oryza glumaepatula OGLUM03G32330 I 0.000
OGLUM07G01740 Oryza glumaepatula OGLUM07G01740 I 0.000
OLONG_001151 Oryza longistaminata OLONG_001151 I 0.000
OLONG_012157 Oryza longistaminata OLONG_012157 I 0.000
OMERI03G29420 Oryza meridionalis OMERI03G29420 I 0.000
OMERI07G01180 Oryza meridionalis OMERI07G01180 I 0.000
ONIVA03G34200 Oryza nivara ONIVA03G34200 I 0.000
ONIVA07G00730 Oryza nivara ONIVA07G00730 I 0.000
OPUNC03G29850 Oryza punctata OPUNC03G29850 I 0.000
OPUNC07G02410 Oryza punctata OPUNC07G02410 I 0.000
orange1.1g029411m.g Citrus sinensis orange1.1g029411m.g I 0.000
orange1.1g038569m.g Citrus sinensis orange1.1g038569m.g I 0.000
ORGLA03G0270100 Oryza glaberrima ORGLA03G0270100 I 0.000
ORGLA03G0296100 Oryza glaberrima ORGLA03G0296100 I 0.000
ORGLA07G0017300 Oryza glaberrima ORGLA07G0017300 I 0.000
ORUFI03G34060 Oryza rufipogon ORUFI03G34060 I 0.000
ORUFI07G01770 Oryza rufipogon ORUFI07G01770 I 0.000
OSH15 Oryza indica BGIOSGA025091 I 0.000
OSH15 Oryza sativa OS07G0129700 I 0.000
Pavir.Ba03909 Panicum virgatum Pavir.Ba03909 I 0.000
Pavir.Bb00225 Panicum virgatum Pavir.Bb00225 I 0.000
Pavir.Ia00733 Panicum virgatum Pavir.Ia00733 I 0.000
Pavir.J00864 Panicum virgatum Pavir.J00864 I 0.000
Pavir.J30099 Panicum virgatum Pavir.J30099 I 0.000
PDK_20s1334792g001 Phoenix dactylifera PDK_20s1334792g001 I 0.000
PGSC0003DMG400013493 Solanum tuberosum PGSC0003DMG400013493 I 0.000
POPTR_0008s19290 Populus trichocarpa POPTR_0008s19290 I 0.000
POPTR_0010s05340 Populus trichocarpa POPTR_0010s05340 I 0.000
POPTR_0012s08900 Populus trichocarpa POPTR_0012s08900 I 0.000
SapurV1A.0069s0110 Salix purpurea SapurV1A.0069s0110 I 0.000
Sb01g009480 Sorghum bicolor Sb01g009480 I 0.000
Sb02g002200 Sorghum bicolor Sb02g002200 I 0.000
Si031454m.g Setaria italica Si031454m.g I 0.000
Si037920m.g Setaria italica Si037920m.g I 0.000
Solyc05g005090.2 Solanum lycopersicum Solyc05g005090.2 I 0.000
TCM_010433 Theobroma cacao TCM_010433 I 0.000
TCM_034627 Theobroma cacao TCM_034627 I 0.000
Thhalv10028724m.g Eutrema salsugineum Thhalv10028724m.g I 0.000
Traes_2AL_E687AF1BE Triticum aestivum Traes_2AL_E687AF1BE I 0.000
Traes_2BL_921BF570C Triticum aestivum Traes_2BL_921BF570C I 0.000
Traes_2DL_0D933D88B Triticum aestivum Traes_2DL_0D933D88B I 0.000
VIT_12s0059g01190 Vitis vinifera VIT_12s0059g01190 I 0.000
VIT_17s0000g08710 Vitis vinifera VIT_17s0000g08710 I 0.000