Cucsa.160980 (Cucumis sativus)
Sigma 70

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF04542 (Sigma70_r2) IPR007627 Cucsa.160980 T324100_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Cucsa.160980.1 Sigma 70 241 311

Links

Other Sigma 70 family TFs
Other Cucumis sativus TFs

1 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29685.m000503 Ricinus communis 29685.m000503 N
Aquca_008_00101 Aquilegia coerulea Aquca_008_00101 N
BGIOSGA012540 Oryza indica BGIOSGA012540 N
Bo5g010680 Brassica oleracea Bo5g010680 N
Bostr.13671s0465 Boechera stricta Bostr.13671s0465 N
BRADI5G11330 Brachypodium distachyon BRADI5G11330 N
Cagra.4395s0212 Capsella grandiflora Cagra.4395s0212 N
Carubv10012599m.g Capsella rubella Carubv10012599m.g N
cassava25471.m1 Manihot esculenta cassava25471.m1 N
Ciclev10000456m.g Citrus clementina Ciclev10000456m.g N
Cucsa.019230 Cucumis sativus Cucsa.019230 N
Eucgr.G00085 Eucalyptus grandis Eucgr.G00085 N
evm.TU.supercontig_113.2 Carica papaya evm.TU.supercontig_113.2 N
FRS11 Arabidopsis thaliana AT1G10240 N
gene29088-v1.0-hybrid Fragaria vesca gene29088-v1.0-hybrid N
GLYMA10G00380 Glycine max GLYMA10G00380 N
Gorai.006G118900 Gossypium raimondii Gorai.006G118900 N
MDP0000234814 Malus domestica MDP0000234814 N
MLOC_15705 Hordeum vulgare MLOC_15705 N
OB04G20960 Oryza brachyantha OB04G20960 N
orange1.1g047253m.g Citrus sinensis orange1.1g047253m.g N
ORGLA04G0107700 Oryza glaberrima ORGLA04G0107700 N
OS04G0443000 Oryza sativa OS04G0443000 N
PDK_20s1635961g004 Phoenix dactylifera PDK_20s1635961g004 N
PDK_20s1756181g001 Phoenix dactylifera PDK_20s1756181g001 N
PK06148.1 Cannabis sativa PK06148.1 N
Pm003854 Prunus mume Pm003854 N
POPTR_0004s23620 Populus trichocarpa POPTR_0004s23620 N
PRUPE_ppa002379mg Prunus persica PRUPE_ppa002379mg N
SapurV1A.0225s0240 Salix purpurea SapurV1A.0225s0240 N
Sb06g017580 Sorghum bicolor Sb06g017580 N
Si012297m.g Setaria italica Si012297m.g N
Solyc01g103180.2 Solanum lycopersicum Solyc01g103180.2 N
TCM_041141 Theobroma cacao TCM_041141 N
Thhalv10006984m.g Eutrema salsugineum Thhalv10006984m.g N
Traes_2AL_9A4A7514E Triticum aestivum Traes_2AL_9A4A7514E N
Traes_2BL_C1DE13045 Triticum aestivum Traes_2BL_C1DE13045 N
TRIUR3_11057 Triticum urartu TRIUR3_11057 N
VIT_12s0035g01360 Vitis vinifera VIT_12s0035g01360 N