ACEP13490 (Atta cephalotes)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 ACEP13490 T326285_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
bbx
M03975_2.00 		Drosophila melanogaster
NAACAATDNCATTGTTN
NAACAATGNHATTGTTN		 SELEX
Nitta et al.(2015)
bbx_1 		0.579 0.631
BBX
M05763_2.00 		Homo sapiens
TGAWCDNYGWTCA
TGAWCRNHGWTCA		 SELEX
Yin et al.(2017)
BBX_eDBD_HT-SELEX 		0.469 0.585
BBX
M05764_2.00 		Homo sapiens
TGAACDNYGTTCA
TGAACRNHGTTCA		 SELEX
Yin et al.(2017)
BBX_eDBD_Methyl-HT-SELEX 		0.469 0.585
Bbx
M00196_2.00 		Mus musculus
TTCATTGA
TCAATGAA		 PBM
Badis et al.(2009)
Bbx_3753 		0.436 0.569
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ACEP13490-PA Sox 1 65

Links

Other Sox family TFs
Other Atta cephalotes TFs

111 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30138.m004082 Ricinus communis 30138.m004082 I 0.000
AC165178.2_FG004 Zea mays AC165178.2_FG004 I 0.000
AMTR_s00010p00261750 Amborella trichopoda AMTR_s00010p00261750 I 0.000
Aquca_002_00594 Aquilegia coerulea Aquca_002_00594 I 0.000
ATMYB30 Vitis vinifera VIT_14s0108g00830 I 0.000
BGIOSGA023865 Oryza indica BGIOSGA023865 I 0.000
BGIOSGA028729 Oryza indica BGIOSGA028729 I 0.000
BGIOSGA028730 Oryza indica BGIOSGA028730 I 0.000
Bo5g009290 Brassica oleracea Bo5g009290 I 0.000
Bra029258 Brassica rapa Bra029258 I 0.000
BRADI3G37047 Brachypodium distachyon BRADI3G37047 I 0.000
BRADI4G30220 Brachypodium distachyon BRADI4G30220 I 0.000
cassava17529.valid.m1 Manihot esculenta cassava17529.valid.m1 I 0.000
cassava31787.valid.m1 Manihot esculenta cassava31787.valid.m1 I 0.000
cassava38120.valid.m1 Manihot esculenta cassava38120.valid.m1 I 0.000
cassava42727.valid.m1 Manihot esculenta cassava42727.valid.m1 I 0.000
Ca_10518 Cicer arietinum Ca_10518 I 0.000
chr1.CM0023.70.nc Lotus japonicus chr1.CM0023.70.nc I 0.000
Ciclev10012152m.g Citrus clementina Ciclev10012152m.g I 0.000
Ciclev10020967m.g Citrus clementina Ciclev10020967m.g I 0.000
Cla010500 Citrullus lanatus Cla010500 I 0.000
Cla018893 Citrullus lanatus Cla018893 I 0.000
CM1835.30.nc Lotus japonicus CM1835.30.nc I 0.000
Cucsa.112760 Cucumis sativus Cucsa.112760 I 0.000
Cucsa.158340 Cucumis sativus Cucsa.158340 I 0.000
Eucgr.J01343 Eucalyptus grandis Eucgr.J01343 I 0.000
Eucgr.K02470 Eucalyptus grandis Eucgr.K02470 I 0.000
F775_18838 Aegilops tauschii F775_18838 N 0.000
F775_21295 Aegilops tauschii F775_21295 N 0.000
F775_22368 Aegilops tauschii F775_22368 N 0.000
F775_25655 Aegilops tauschii F775_25655 I 0.000
gene03817-v1.0-hybrid Fragaria vesca gene03817-v1.0-hybrid I 0.000
gene26007-v1.0-hybrid Fragaria vesca gene26007-v1.0-hybrid I 0.000
GLYMA04G33720 Glycine max GLYMA04G33720 I 0.000
GLYMA05G01080 Glycine max GLYMA05G01080 I 0.000
GLYMA06G20800 Glycine max GLYMA06G20800 I 0.000
GLYMA13G05370 Glycine max GLYMA13G05370 I 0.000
GLYMA17G10820 Glycine max GLYMA17G10820 I 0.000
GLYMA19G02600 Glycine max GLYMA19G02600 I 0.000
Gorai.006G017400 Gossypium raimondii Gorai.006G017400 I 0.000
Gorai.007G037100 Gossypium raimondii Gorai.007G037100 I 0.000
Gorai.008G192900 Gossypium raimondii Gorai.008G192900 I 0.000
Gorai.012G054500 Gossypium raimondii Gorai.012G054500 I 0.000
GRMZM2G045748 Zea mays GRMZM2G045748 I 0.000
GRMZM2G056407 Zea mays GRMZM2G056407 I 0.000
GRMZM2G098179 Zea mays GRMZM2G098179 I 0.000
GSMUA_Achr10G01620_001 Musa acuminata GSMUA_Achr10G01620_001 I 0.000
GSMUA_Achr2G22010_001 Musa acuminata GSMUA_Achr2G22010_001 I 0.000
GSMUA_Achr4G00480_001 Musa acuminata GSMUA_Achr4G00480_001 I 0.000
GSMUA_Achr6G10700_001 Musa acuminata GSMUA_Achr6G10700_001 I 0.000
GSMUA_Achr7G21010_001 Musa acuminata GSMUA_Achr7G21010_001 I 0.000
GSMUA_Achr8G01400_001 Musa acuminata GSMUA_Achr8G01400_001 I 0.000
GSMUA_AchrUn_randomG02160_001 Musa acuminata GSMUA_AchrUn_randomG02160_001 I 0.000
LPERR07G20060 Leersia perrieri LPERR07G20060 I 0.000
LPERR09G07060 Leersia perrieri LPERR09G07060 I 0.000
Lus10002056.g Linum usitatissimum Lus10002056.g I 0.000
Lus10015369.g Linum usitatissimum Lus10015369.g I 0.000
MDP0000144744 Malus domestica MDP0000144744 I 0.000
MDP0000149102 Malus domestica MDP0000149102 I 0.000
MDP0000149535 Malus domestica MDP0000149535 I 0.000
MDP0000219359 Malus domestica MDP0000219359 I 0.000
MDP0000805075 Malus domestica MDP0000805075 I 0.000
mg015532m Mimulus guttatus mg015532m I 0.000
mgf000996m Mimulus guttatus mgf000996m I 0.000
MLOC_34885 Hordeum vulgare MLOC_34885 I 0.000
MLOC_62516 Hordeum vulgare MLOC_62516 I 0.000
MTR_3g039990 Medicago truncatula MTR_3g039990 I 0.000
MTR_6g012180 Medicago truncatula MTR_6g012180 I 0.000
OB03G28590 Oryza brachyantha OB03G28590 I 0.000
OB07G28650 Oryza brachyantha OB07G28650 I 0.000
OB08G23440 Oryza brachyantha OB08G23440 I 0.000
OB09G16780 Oryza brachyantha OB09G16780 I 0.000
OGLUM07G23120 Oryza glumaepatula OGLUM07G23120 I 0.000
OMERI07G19460 Oryza meridionalis OMERI07G19460 I 0.000
ONIVA07G22680 Oryza nivara ONIVA07G22680 I 0.000
OPUNC03G18230 Oryza punctata OPUNC03G18230 I 0.000
orange1.1g019307m.g Citrus sinensis orange1.1g019307m.g I 0.000
ORGLA07G0180600 Oryza glaberrima ORGLA07G0180600 I 0.000
ORUFI07G24230 Oryza rufipogon ORUFI07G24230 I 0.000
OS07G0629000 Oryza sativa OS07G0629000 I 0.000
OS08G0437300 Oryza sativa OS08G0437300 I 0.000
Pavir.Ba01835 Panicum virgatum Pavir.Ba01835 I 0.000
Pavir.Bb02186 Panicum virgatum Pavir.Bb02186 I 0.000
Pavir.Bb03412 Panicum virgatum Pavir.Bb03412 I 0.000
Pavir.Fa00895 Panicum virgatum Pavir.Fa00895 I 0.000
Pavir.Fb01648 Panicum virgatum Pavir.Fb01648 I 0.000
PDK_20s1306201g001 Phoenix dactylifera PDK_20s1306201g001 I 0.000
PGSC0003DMG400033043 Solanum tuberosum PGSC0003DMG400033043 I 0.000
PK20858.1 Cannabis sativa PK20858.1 I 0.000
Pm015880 Prunus mume Pm015880 I 0.000
Pm024912 Prunus mume Pm024912 I 0.000
POPTR_0004s12530 Populus trichocarpa POPTR_0004s12530 I 0.000
POPTR_0017s11880 Populus trichocarpa POPTR_0017s11880 I 0.000
PRUPE_ppa007562mg Prunus persica PRUPE_ppa007562mg I 0.000
PRUPE_ppa008366mg Prunus persica PRUPE_ppa008366mg I 0.000
SapurV1A.0300s0080 Salix purpurea SapurV1A.0300s0080 I 0.000
SapurV1A.0552s0030 Salix purpurea SapurV1A.0552s0030 I 0.000
SapurV1A.0849s0010 Salix purpurea SapurV1A.0849s0010 I 0.000
Sb02g040160 Sorghum bicolor Sb02g040160 I 0.000
Sb07g021420 Sorghum bicolor Sb07g021420 I 0.000
Sb08g001800 Sorghum bicolor Sb08g001800 I 0.000
Si014183m.g Setaria italica Si014183m.g I 0.000
Si030560m.g Setaria italica Si030560m.g I 0.000
Solyc06g069850.2 Solanum lycopersicum Solyc06g069850.2 I 0.000
TCM_013983 Theobroma cacao TCM_013983 I 0.000
TCM_018538 Theobroma cacao TCM_018538 I 0.000
Traes_5BL_632EBAD09 Triticum aestivum Traes_5BL_632EBAD09 I 0.000
Traes_5DL_1D036F8B5 Triticum aestivum Traes_5DL_1D036F8B5 I 0.000
TRIUR3_21190 Triticum urartu TRIUR3_21190 N 0.000
VIT_17s0000g06190 Vitis vinifera VIT_17s0000g06190 I 0.000