HMGB1 (Arabidopsis thaliana)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 AT3G51880 T326480_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMG-1
M02720_2.00 		Pisum sativum
STYGTDHTY
RADHACRAS		 SELEX
Mathelier et al.(2014)
MA0044.1 		0.681 0.739
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AT3G51880.1 Sox 53 122
AT3G51880.2 Sox 53 122
AT3G51880.3 Sox 53 122
AT3G51880.4 Sox 53 122
AT3G51880.5 Sox 53 122

Links

Other Sox family TFs
Other Arabidopsis thaliana TFs

328 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AAEL006609 Aedes aegypti AAEL006609 I
AALB000668 Anopheles albimanus AALB000668 I
AARA003888 Anopheles arabiensis AARA003888 I
ACEP10867 Atta cephalotes ACEP10867 I
ACOM026746 Anopheles coluzzii ACOM026746 I
ACUA013995 Anopheles culicifacies ACUA013995 I
AFAF014334 Anopheles farauti AFAF014334 I
AFUN003293 Anopheles funestus AFUN003293 I
AGAP009889 Anopheles gambiae AGAP009889 I
AMAM002233 Anopheles maculatus AMAM002233 I
AMEM009801 Anopheles merus AMEM009801 I
AMIN009608 Anopheles minimus AMIN009608 I
ASIS021840 Anopheles sinensis ASIS021840 I
ASTEI06573 Anopheles stephensi ASTEI06573 I
BGIBMGA006120 Bombyx mori BGIBMGA006120 I
cbt Drosophila simulans FBgn0194348 I
cbt Drosophila yakuba FBgn0233632 I
cbt Drosophila willistoni FBgn0226609 I
cbt Drosophila virilis FBgn0206865 I
cbt Drosophila sechellia FBgn0171577 I
cbt Drosophila mojavensis FBgn0140770 I
cbt Drosophila grimshawi FBgn0117994 I
cbt Drosophila erecta FBgn0116778 I
cbt Drosophila ananassae FBgn0101744 I
cbt Drosophila melanogaster FBgn0043364 D
cbt Drosophila pseudoobscura FBgn0078183 I
CPIJ015908 Culex quinquefasciatus CPIJ015908 I
CpipJ_CPIJ015908 Culex pipiens CpipJ_CPIJ015908 I
ENSAMEG00000011355 Ailuropoda melanoleuca ENSAMEG00000011355 I
ENSCSAG00000007163 Chlorocebus sabaeus ENSCSAG00000007163 I
ENSCSAVG00000009024 Ciona savignyi ENSCSAVG00000009024 I
ENSPANG00000008644 Papio anubis ENSPANG00000008644 I
ENSSHAG00000005846 Sarcophilus harrisii ENSSHAG00000005846 I
ENSSTOG00000002442 Ictidomys tridecemlineatus ENSSTOG00000002442 I
GB45040 Apis mellifera GB45040 I
HMEL002401 Heliconius melpomene HMEL002401 I
HmN_000574300 Hymenolepis microstoma HmN_000574300 N
KGM_22205 Danaus plexippus KGM_22205 I
KLF11 Homo sapiens ENSG00000172059 D
KLF11 Pteropus vampyrus ENSPVAG00000017463 I
KLF11 Pan troglodytes ENSPTRG00000011645 I
KLF11 Otolemur garnettii ENSOGAG00000026035 I
KLF11 Canis familiaris ENSCAFG00000003405 I
KLF11 Ornithorhynchus anatinus ENSOANG00000007790 I
KLF11 Dasypus novemcinctus ENSDNOG00000035689 I
KLF11 Felis catus ENSFCAG00000030965 I
KLF11 Gorilla gorilla ENSGGOG00000012494 I
KLF11 Loxodonta africana ENSLAFG00000032182 I
KLF11 Monodelphis domestica ENSMODG00000014758 I
L798_11067 Zootermopsis nevadensis L798_11067 I
LCUP009846 Lucilia cuprina LCUP009846 I
LDEC016289 Leptinotarsa decemlineata LDEC016289 I
MDOA003755 Musca domestica MDOA003755 I
MDOA014851 Musca domestica MDOA014851 I
NV23733 Nasonia vitripennis NV23733 I
PHUM248360 Pediculus humanus PHUM248360 I
PPAI003307 Phlebotomus papatasi PPAI003307 I
SINV19724 Solenopsis invicta SINV19724 I
TC014124 Tribolium castaneum TC014124 I
XP_002161066.1 Hydra magnipapillata XP_002161066.1 I
YQE_06283 Dendroctonus ponderosae YQE_06283 I