CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bcin11g05790
(
Botrytis cinerea
)
Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00505 (HMG_box)
IPR000910
Bcin11g05790
T326540_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
fmf-1
M02491_2.00
Neurospora crassa
TCTTTGTY
RACAAAGA
PBM
Weirauch et al.(2014)
pTH8941
0.595
0.652
ste11
M11342_2.00
Schizosaccharomyces pombe
DWNTTTCTTTGTTHNHWW
WWDNDAACAAAGAAANWH
Transfac
Matys et al.(2006)
F$STE11_01
0.533
0.420
ste11
M11343_2.00
Schizosaccharomyces pombe
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
F$STE11_02
0.533
0.420
mat1-Mc
M11340_2.00
Schizosaccharomyces pombe
NRMNNAACAAAGAVRYMW
AKRYBTCTTTGTTNNKYN
Transfac
Matys et al.(2006)
F$MAT1MC_01
0.446
0.304
mat1-Mc
M11341_2.00
Schizosaccharomyces pombe
YYHATTGTYD
HRACAATDRR
Transfac
Matys et al.(2006)
F$MAT1MC_02
0.446
0.304
NCU02326
M02489_2.00
Neurospora crassa
NNNNTATTRWWAN
NTWWYAATANNNN
PBM
Weirauch et al.(2014)
pTH8922
0.424
0.304
For this family, TFs with SR scores >
0.415
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bcin11g05790.1
Sox
202
270
VKRPMNSFMLYRKAYQNRTKDWCLQNNHQVVSQVCGDSWPLEPDAVKEQFSEWARLERINHQNAHPGYK
Links
Other
Sox
family TFs
Other
Botrytis cinerea
TFs
341 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Sakowv30011194m.g
Saccoglossus kowalevskii
Sakowv30011194m.g
N
Sakowv30018179m.g
Saccoglossus kowalevskii
Sakowv30018179m.g
N
Sakowv30022427m.g
Saccoglossus kowalevskii
Sakowv30022427m.g
N
Sakowv30022428m.g
Saccoglossus kowalevskii
Sakowv30022428m.g
N
Sakowv30026431m.g
Saccoglossus kowalevskii
Sakowv30026431m.g
N