Bo9g001130 (Brassica oleracea)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 Bo9g001130 T326672_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
YAB1
M00890_2.00 		Arabidopsis thaliana
AATAATWA
TWATTATT		 PBM
Franco-Zorrilla et al.(2014)
YAB1 		0.741 1.000
YAB5
M02486_2.00 		Arabidopsis thaliana
NNNNHRN
NYDNNNN		 PBM
Weirauch et al.(2014)
pTH7575 		0.707 0.932
YAB5
M00889_2.00 		Arabidopsis thaliana
NATRATTADNNN
NNNHTAATYATN		 PBM
Franco-Zorrilla et al.(2014)
YAB5 		0.707 0.932
CRC
M07266_2.00 		Arabidopsis thaliana
TWATCATW
WATGATWA		 Dap-seq
OMalley et al.(2016)
CRC_col_a 		0.660 0.705
CRC
M07267_2.00 		Arabidopsis thaliana
GGTTAGTGTTTTGGAGTCGAATATGACTTG
CAAGTCATATTCGACTCCAAAACACTAACC		 Dap-seq
OMalley et al.(2016)
CRC_colamp_a 		0.660 0.705
INO
M02485_2.00 		Arabidopsis thaliana
NHNNNYRNNN
NNNYRNNNDN		 PBM
Weirauch et al.(2014)
pTH7516 		0.596 0.750
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo9g001130.1 Sox 151 194

Links

Other Sox family TFs
Other Brassica oleracea TFs

531 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
10452_Multiple Saccharomyces mikatae 10452_Multiple I 0.000
10716_YIL130W Saccharomyces paradoxus 10716_YIL130W I 0.000
11848_Multiple Saccharomyces bayanus 11848_Multiple I 0.000
A1O1_01019 Capronia coronata A1O1_01019 I 0.000
A1O3_07535 Capronia epimyces A1O3_07535 I 0.000
A1O5_04202 Cladophialophora psammophila A1O5_04202 I 0.000
A1O7_00074 Cladophialophora yegresii A1O7_00074 I 0.000
AACERI_AaceriAER370W Saccharomycetaceae sp ashbya aceri AACERI_AaceriAER370W I 0.000
ACLA_039870 Aspergillus clavatus CADACLAG00003667 I 0.000
AFUA_3G11990 Aspergillus fumigatus CADAFUAG00005328 I 0.000
ANIA_02852 Aspergillus nidulans CADANIAG00010238 I 0.000
ASG1 Saccharomyces cerevisiae YIL130W D 0.000
AUEXF2481DRAFT_64674 Aureobasidium subglaciale AUEXF2481DRAFT_64674 I 0.000
BAUCODRAFT_197012 Baudoinia compniacensis BAUCODRAFT_197012 I 0.000
BN7_630 Wickerhamomyces ciferrii BN7_630 I 0.000
CADAFLAG00002428 Aspergillus flavus CADAFLAG00002428 I 0.000
CADANGAG00002302 Aspergillus niger CADANGAG00002302 I 0.000
CADAORAG00001356 Aspergillus oryzae CADAORAG00001356 I 0.000
CAGL0G08844g Candida glabrata CAGL0G08844g I 0.000
DOTSEDRAFT_68949 Dothistroma septosporum DOTSEDRAFT_68949 I 0.000
Ecym_5397 Eremothecium cymbalariae Ecym_5397 I 0.000
EURHEDRAFT_457145 Aspergillus ruber EURHEDRAFT_457145 I 0.000
fgenesh1_pg.00866_#_460 Aspergillus carbonarius fgenesh1_pg.00866_#_460 I 0.000
fgenesh1_pg.C_scaffold_9000142 Cryphonectria parasitica fgenesh1_pg.C_scaffold_9000142 I 0.000
G647_00084 Cladophialophora carrionii G647_00084 I 0.000
GMDG_03842 Pseudogymnoascus destructans GMDG_03842 I 0.000
GSTUM_00004065001 Tuber melanosporum GSTUM_00004065001 I 0.000
H101_06009 Trichophyton interdigitale H101_06009 I 0.000
H102_08256 Trichophyton rubrum H102_08256 I 0.000
H105_08284 Trichophyton soudanense H105_08284 I 0.000
HMPREF1120_00700 Exophiala dermatitidis HMPREF1120_00700 I 0.000
KAFR_0J01710 Kazachstania africana KAFR_0J01710 I 0.000
KLLA0_F04609g Kluyveromyces lactis KLLA0_F04609g I 0.000
KLTH0G09108g Lachancea thermotolerans KLTH0G09108g I 0.000
KLTH0G09108g Kluyveromyces thermotolerans KLTH0G09108g I 0.000
KNAG_0E01760 Kazachstania naganishii KNAG_0E01760 I 0.000
Kpol_1039p11 Vanderwaltozyma polyspora Kpol_1039p11 I 0.000
KUCA_T00002124001 Kuraishia capsulata KUCA_T00002124001 I 0.000
Kwal_4754 Kluyveromyces waltii Kwal_4754 I 0.000
LALA0_S04e08614g Lachancea lanzarotensis LALA0_S04e08614g I 0.000
LEMA_P018460.1 Leptosphaeria maculans LEMA_P018460.1 I 0.000
M437DRAFT_43351 Aureobasidium melanogenum M437DRAFT_43351 I 0.000
M438DRAFT_374425 Aureobasidium pullulans M438DRAFT_374425 I 0.000
MCYG_01011 Arthroderma otae MCYG_01011 I 0.000
MCYG_01011 Microsporum canis MCYG_01011 I 0.000
MGYG_00975 Microsporum gypseum MGYG_00975 I 0.000
MPH_05518 Macrophomina phaseolina MPH_05518 I 0.000
NCAS_0B06550 Naumovozyma castellii NCAS_0B06550 I 0.000
NDAI_0B03850 Naumovozyma dairenensis NDAI_0B03850 I 0.000
NFIA_065310 Neosartorya fischeri CADNFIAG00006112 I 0.000
PAS_chr4_0203 Komagataella pastoris PAS_chr4_0203 I 0.000
Pc18g00400 Penicillium chrysogenum Pc18g00400 I 0.000
PCH_Pc18g00400 Penicillium rubens PCH_Pc18g00400 I 0.000
PDE_05166 Penicillium oxalicum PDE_05166 I 0.000
PEX1_059620 Penicillium expansum PEX1_059620 I 0.000
PITC_065240 Penicillium italicum PITC_065240 I 0.000
PV04_02027 Capronia semiimmersa PV04_02027 I 0.000
PV05_10933 Exophiala xenobiotica PV05_10933 I 0.000
PV07_10738 Cladophialophora immunda PV07_10738 I 0.000
PV08_06047 Exophiala spinifera PV08_06047 I 0.000
PV09_07264 Verruconis gallopava PV09_07264 I 0.000
PV10_09014 Exophiala mesophila PV10_09014 I 0.000
PV11_07819 Exophiala sideris PV11_07819 I 0.000
PVAR5_3046 Byssochlamys spectabilis PVAR5_3046 I 0.000
SAKL0E08998g Lachancea kluyveri SAKL0E08998g I 0.000
Scas_Contig662.8 Saccharomyces castellii Scas_Contig662.8 I 0.000
SEPMUDRAFT_122857 Sphaerulina musiva SEPMUDRAFT_122857 I 0.000
SU7_1579 Saccharomyces arboricola SU7_1579 I 0.000
TBLA_0G02610 Tetrapisispora blattae TBLA_0G02610 I 0.000
TDEL_0C04480 Torulaspora delbrueckii TDEL_0C04480 I 0.000
TEQG_01038 Trichophyton equinum TEQG_01038 I 0.000
TESG_04568 Trichophyton tonsurans TESG_04568 I 0.000
TSTA_032370 Talaromyces stipitatus TSTA_032370 I 0.000
U727_0043393211 Penicillium solitum U727_0043393211 I 0.000
UCRNP2_4088 Neofusicoccum parvum UCRNP2_4088 I 0.000
XP_002493608.1 Pichia pastoris XP_002493608.1 I 0.000
YALI0_C22990g Yarrowia lipolytica YALI0_C22990g I 0.000
Z517_08868 Fonsecaea pedrosoi Z517_08868 I 0.000
Z518_07968 Rhinocladiella mackenziei Z518_07968 I 0.000
Z519_03481 Cladophialophora bantiana Z519_03481 I 0.000