CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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ENSCSAVG00000009270
(
Ciona savignyi
)
Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00505 (HMG_box)
IPR000910
ENSCSAVG00000009270
T327825_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSCSAVP00000015780
Sox
239
307
PQKPVSAYALFFRDTQAAIKAENPSATFGEISKIVASMWDSLSEEAKSVYKLKTETAKRDYLKQLAAYR
Links
Other
Sox
family TFs
Other
Ciona savignyi
TFs
176 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
fgenesh1_pg.C_scaffold_1003053
Arabidopsis lyrata
fgenesh1_pg.C_scaffold_1003053
N
LjSGA_065309.1
Lotus japonicus
LjSGA_065309.1
N
MDP0000205568
Malus domestica
MDP0000205568
N
MDP0000403071
Malus domestica
MDP0000403071
N
OLONG_019147
Oryza longistaminata
OLONG_019147
N
ORUFI11G01560
Oryza rufipogon
ORUFI11G01560
N
PDK_20s130094267g001
Phoenix dactylifera
PDK_20s130094267g001
N
PGSC0003DMG400028125
Solanum tuberosum
PGSC0003DMG400028125
I
Traes_2AS_239CDF865
Triticum aestivum
Traes_2AS_239CDF865
N