GSMUA_Achr8G04750_001 (Musa acuminata)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 GSMUA_Achr8G04750_001 T330377_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
YAB1
M00890_2.00 		Arabidopsis thaliana
AATAATWA
TWATTATT		 PBM
Franco-Zorrilla et al.(2014)
YAB1 		0.710 0.756
YAB5
M02486_2.00 		Arabidopsis thaliana
NNNNHRN
NYDNNNN		 PBM
Weirauch et al.(2014)
pTH7575 		0.680 0.756
YAB5
M00889_2.00 		Arabidopsis thaliana
NATRATTADNNN
NNNHTAATYATN		 PBM
Franco-Zorrilla et al.(2014)
YAB5 		0.680 0.756
CRC
M07266_2.00 		Arabidopsis thaliana
TWATCATW
WATGATWA		 Dap-seq
OMalley et al.(2016)
CRC_col_a 		0.634 0.600
CRC
M07267_2.00 		Arabidopsis thaliana
GGTTAGTGTTTTGGAGTCGAATATGACTTG
CAAGTCATATTCGACTCCAAAACACTAACC		 Dap-seq
OMalley et al.(2016)
CRC_colamp_a 		0.634 0.600
INO
M02485_2.00 		Arabidopsis thaliana
NHNNNYRNNN
NNNYRNNNDN		 PBM
Weirauch et al.(2014)
pTH7516 		0.622 0.733
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
GSMUA_Achr8P04750_001 Sox 107 151

Links

Other Sox family TFs
Other Musa acuminata TFs

538 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
CY34DRAFT_799669 Suillus luteus CY34DRAFT_799669 N 0.000
FFUJ_07008 Fusarium fujikuroi FFUJ_07008 N 0.000
fgenesh1_pg.sca_82_chr10_2_0000236 Nectria haematococca fgenesh1_pg.sca_82_chr10_2_0000236 N 0.000
FOXG_04965 Fusarium oxysporum FOXG_04965 N 0.000
FPSE_07445 Fusarium pseudograminearum FPSE_07445 N 0.000
NechaG85633 Fusarium solani NechaG85633 N 0.000