CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

M404DRAFT_69579 *(Pisolithus tinctorius)* Sox
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00505 (HMG_box)	IPR000910	M404DRAFT_69579	T331009_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
ste11 M11342_2.00	Schizosaccharomyces pombe	DWNTTTCTTTGTTHNHWW	WWDNDAACAAAGAAANWH	Transfac Matys et al.(2006) F$STE11_01	0.483	0.333
ste11 M11343_2.00	Schizosaccharomyces pombe	Transfac license required	Transfac license required	Transfac Matys et al.(2006) F$STE11_02	0.483	0.333
SRY M03525_2.00	Homo sapiens	AACAATANCATTGTT	AACAATGNTATTGTT	SELEX Jolma et al.(2013) SRY_1	0.442	0.333
SRY M03526_2.00	Homo sapiens	AACAATHHNCATTGTT	AACAATGNDDATTGTT	SELEX Jolma et al.(2013) SRY_2	0.442	0.333
SRY M03527_2.00	Homo sapiens	TCAATAMCATTGA	TCAATGKTATTGA	SELEX Jolma et al.(2013) SRY_3	0.442	0.333
SRY M03528_2.00	Homo sapiens	TGAATANCATTCA	TGAATGNTATTCA	SELEX Jolma et al.(2013) SRY_4	0.442	0.333
SRY M05898_2.00	Homo sapiens	NACAATNV	BNATTGTN	SMiLE-seq Isakova et al.(2017) SRY	0.442	0.333
SRY M02717_2.00	Homo sapiens	NDWAACAAW	WTTGTWWHN	SELEX Mathelier et al.(2014) MA0084.1	0.442	0.333
SRY M09398_2.00	Homo sapiens	BWTTGTTWH	DWAACAAWV	Misc Kulakovskiy et al.(2013) SRY_HUMAN.H11MO.0.B	0.442	0.333
SRY M11331_2.00	Homo sapiens	AAWSWMM	KKWSWTT	Transfac Matys et al.(2006) V$SRY_01	0.442	0.333
SRY M11332_2.00	Homo sapiens	HBHWTTGTTWDN	NHWAACAAWDVD	Transfac Matys et al.(2006) V$SRY_02	0.442	0.333
SRY M11333_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$SRY_Q6	0.442	0.333
ROX1 M00070_2.00	Saccharomyces cerevisiae	NRAACAATWNN	NNWATTGTTYN	PBM Badis et al.(2008) ROX1_2099	0.435	0.420
ROX1 M07498_2.00	Saccharomyces cerevisiae	YYHATTGTTYTS	SARAACAATDRR	PBM, CSA and or DIP-chip Mathelier et al.(2014) MA0371.1	0.435	0.420
ROX1 M08607_2.00	Saccharomyces cerevisiae	BYATTGTN	NACAATRV	Misc DeBoer et al.(2011) YPR065W_1396	0.435	0.420
ROX1 M11346_2.00	Saccharomyces cerevisiae	Transfac license required	Transfac license required	Transfac Matys et al.(2006) F$ROX1_Q6_01	0.435	0.420
ROX1 M11347_2.00	Saccharomyces cerevisiae	Transfac license required	Transfac license required	Transfac Matys et al.(2006) F$ROX1_Q6	0.435	0.420
Sox6 M00828_2.00	Mus musculus	WTTGTNNNN	NNNNACAAW	PBM Weirauch et al.(2013) pTH3862	0.422	0.348
SOX6 M05892_2.00	Homo sapiens	DRACAATRVN	NBYATTGTYH	SMiLE-seq Isakova et al.(2017) SOX6	0.422	0.348
Sox6 M08169_2.00	Mus musculus	BCWTTGTYYY	RRRACAAWGV	ChIP-seq Mathelier et al.(2014) MA0515.1	0.422	0.348
Sox6 M09640_2.00	Mus musculus	BHWTTGTBNN	NNVACAAWDV	Misc Heinz et al.(2010) Myotubes-Sox6_GSE32627	0.422	0.348
SOX6 M11300_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$SOX6_Q5	0.422	0.348
Sox7 M00209_2.00	Mus musculus	NNNWBAAT	ATTVWNNN	PBM Badis et al.(2009) Sox7_3460	0.419	0.290
SOX7 M03516_2.00	Homo sapiens	AACAATRDNHAKTGTT	AACAMTDNHYATTGTT	SELEX Jolma et al.(2013) SOX7_1	0.419	0.290
SOX7 M03517_2.00	Homo sapiens	DAACAATKDYAKTGTTN	NAACAMTRHMATTGTTH	SELEX Jolma et al.(2013) SOX7_2	0.419	0.290
SOX7 M03518_2.00	Homo sapiens	NATGAATKDCAKTCATN	NATGAMTGHMATTCATN	SELEX Jolma et al.(2013) SOX7_3	0.419	0.290
SOX7 M05787_2.00	Homo sapiens	ACAATDNHATTGT	ACAATDNHATTGT	SELEX Yin et al.(2017) SOX7_eDBD_HT-SELEX	0.419	0.290
SOX7 M11325_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$SOX7_Q2	0.419	0.290
SOX7 M05788_2.00	Homo sapiens	ACAATDNHATTGT	ACAATDNHATTGT	SELEX Yin et al.(2017) SOX7_eDBD_Methyl-HT-SELEX	0.419	0.290
mat1-Mc M11340_2.00	Schizosaccharomyces pombe	NRMNNAACAAAGAVRYMW	AKRYBTCTTTGTTNNKYN	Transfac Matys et al.(2006) F$MAT1MC_01	0.415	0.333
mat1-Mc M11341_2.00	Schizosaccharomyces pombe	YYHATTGTYD	HRACAATDRR	Transfac Matys et al.(2006) F$MAT1MC_02	0.415	0.333
Sox5 M00203_2.00	Mus musculus	ATTGTBNN	NNVACAAT	PBM Badis et al.(2009) Sox5_3459	0.415	0.333
SOX5 M05894_2.00	Homo sapiens	DVACAATRVN	NBYATTGTBH	SMiLE-seq Isakova et al.(2017) SOX5	0.415	0.333
Sox5 M02719_2.00	Mus musculus	NAACAAT	ATTGTTN	SELEX Mathelier et al.(2014) MA0087.1	0.415	0.333
SOX5 M09390_2.00	Homo sapiens	NAACAATN	NATTGTTN	Misc Kulakovskiy et al.(2013) SOX5_HUMAN.H11MO.0.C	0.415	0.333
Sox5 M09404_2.00	Mus musculus	NAACAATN	NATTGTTN	Misc Kulakovskiy et al.(2013) SOX5_MOUSE.H11MO.0.C	0.415	0.333
SOX5 M11309_2.00	Homo sapiens	NNAACAATNN	NNATTGTTNN	Transfac Matys et al.(2006) V$SOX5_01	0.415	0.333
SOX5 M11310_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$SOX5_Q5	0.415	0.333
Sox13 M00212_2.00	Mus musculus	RAACAATW	WATTGTTY	PBM Badis et al.(2009) Sox13_1718	0.415	0.319
SOX13 M08166_2.00	Homo sapiens	NNACAATGVNN	NNBCATTGTNN	ChIP-seq Mathelier et al.(2014) MA1120.1	0.415	0.319
For this family, TFs with SR scores > 0.415* will likely have a similar motif*