MBM_09015 (Marssonina brunnea)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 MBM_09015 T331202_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ROX1
M00070_2.00 		Saccharomyces cerevisiae
NRAACAATWNN
NNWATTGTTYN		 PBM
Badis et al.(2008)
ROX1_2099 		0.494 0.507
ROX1
M07498_2.00 		Saccharomyces cerevisiae
YYHATTGTTYTS
SARAACAATDRR		 PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0371.1 		0.494 0.507
ROX1
M08607_2.00 		Saccharomyces cerevisiae
BYATTGTN
NACAATRV		 Misc
DeBoer et al.(2011)
YPR065W_1396 		0.494 0.507
ROX1
M11346_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$ROX1_Q6_01 		0.494 0.507
ROX1
M11347_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$ROX1_Q6 		0.494 0.507
Sox12
M00205_2.00 		Mus musculus
HWTTGTBNNN
NNNVACAAWD		 PBM
Badis et al.(2009)
Sox12_3957 		0.448 0.362
SOX12
M05789_2.00 		Homo sapiens
NATTGTTCGGK
MCCGAACAATN		 SELEX
Yin et al.(2017)
SOX12_eDBD_HT-SELEX 		0.448 0.362
SOX12
M05790_2.00 		Homo sapiens
YATTGTTCBKT
AMVGAACAATR		 SELEX
Yin et al.(2017)
SOX12_eDBD_Methyl-HT-SELEX 		0.448 0.362
Sox15
M00202_2.00 		Mus musculus
WTTVWNNNN
NNNNWBAAW		 PBM
Badis et al.(2009)
Sox15_3457 		0.447 0.362
SOX15
M03508_2.00 		Homo sapiens
AACAATAMCATTGTT
AACAATGKTATTGTT		 SELEX
Jolma et al.(2013)
SOX15_1 		0.447 0.348
SOX15
M03509_2.00 		Homo sapiens
ATCAATAMCATTGAT
ATCAATGKTATTGAT		 SELEX
Jolma et al.(2013)
SOX15_2 		0.447 0.348
SOX15
M03510_2.00 		Homo sapiens
ATGAATAACATTCAT
ATGAATGTTATTCAT		 SELEX
Jolma et al.(2013)
SOX15_3 		0.447 0.348
SOX15
M05893_2.00 		Homo sapiens
YYWTTGTNHN
NDNACAAWRR		 SMiLE-seq
Isakova et al.(2017)
SOX15 		0.447 0.348
SOX15
M11308_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SOX15_Q3 		0.447 0.348
mat1-Mc
M11340_2.00 		Schizosaccharomyces pombe
NRMNNAACAAAGAVRYMW
AKRYBTCTTTGTTNNKYN		 Transfac
Matys et al.(2006)
F$MAT1MC_01 		0.442 0.420
mat1-Mc
M11341_2.00 		Schizosaccharomyces pombe
YYHATTGTYD
HRACAATDRR		 Transfac
Matys et al.(2006)
F$MAT1MC_02 		0.442 0.420
ste11
M11342_2.00 		Schizosaccharomyces pombe
DWNTTTCTTTGTTHNHWW
WWDNDAACAAAGAAANWH		 Transfac
Matys et al.(2006)
F$STE11_01 		0.437 0.362
ste11
M11343_2.00 		Schizosaccharomyces pombe Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$STE11_02 		0.437 0.362
egl-13
M00710_2.00 		Caenorhabditis elegans
NNAACAATWN
NWATTGTTNN		 PBM
Narasimhan et al.(2015)
pTH9125 		0.434 0.290
Sox102F
M03981_2.00 		Drosophila melanogaster
ATTGTTCGGTGKN
NMCACCGAACAAT		 SELEX
Nitta et al.(2015)
Sox102F_1 		0.434 0.290
Sox102F
M03982_2.00 		Drosophila melanogaster
NAACAATDDCATTGTTN
NAACAATGHHATTGTTN		 SELEX
Nitta et al.(2015)
Sox102F_2 		0.434 0.290
SOX4
M01026_2.00 		Homo sapiens
AACAAWGR
YCWTTGTT		 PBM
Scharer et al.(2009)
Sox4 		0.419 0.348
SOX4
M03496_2.00 		Homo sapiens
NAACAATTKCAGTGTT
AACACTGMAATTGTTN		 SELEX
Jolma et al.(2013)
SOX4_1 		0.419 0.348
SOX4
M05765_2.00 		Homo sapiens
NRACAAWGVV
BBCWTTGTYN		 SELEX
Yin et al.(2017)
SOX4_eDBD_HT-SELEX 		0.419 0.348
SOX4
M09388_2.00 		Homo sapiens
BYCTTTGTYYBB
VVRRACAAAGRV		 Misc
Kulakovskiy et al.(2013)
SOX4_HUMAN.H11MO.0.B 		0.419 0.348
SOX4
M11301_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SOX4_Q3 		0.419 0.348
SOX4
M11302_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SOX4_Q5_02 		0.419 0.348
SOX4
M11303_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SOX4_Q5 		0.419 0.348
SOX4
M05766_2.00 		Homo sapiens
NRACAAWGVV
BBCWTTGTYN		 SELEX
Yin et al.(2017)
SOX4_eDBD_Methyl-HT-SELEX 		0.419 0.348
Sox11
M00210_2.00 		Mus musculus
WTTGTBNNN
NNNVACAAW		 PBM
Badis et al.(2009)
Sox11_2266 		0.419 0.333
Sox4
M00213_2.00 		Mus musculus
NNVACAAWD
HWTTGTBNN		 PBM
Badis et al.(2009)
Sox4_2941 		0.419 0.333
Sox11
M03541_2.00 		Mus musculus
AACAATTKCAGTGTT
AACACTGMAATTGTT		 SELEX
Jolma et al.(2013)
Sox11_1 		0.419 0.333
Sox4
M09410_2.00 		Mus musculus
BYCTTTGTYYBB
VVRRACAAAGRV		 Misc
Kulakovskiy et al.(2013)
SOX4_MOUSE.H11MO.0.A 		0.419 0.333
Sox4
M09641_2.00 		Mus musculus
BCWTTGTYCN
NGRACAAWGV		 Misc
Heinz et al.(2010)
proB-Sox4_GSE50066 		0.419 0.333
SOX11
M11326_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SOX11_Q6 		0.419 0.333
sem-2
M02488_2.00 		Caenorhabditis elegans
NNNHVNNNNN
NNNNNBDNNN		 PBM
Weirauch et al.(2014)
pTH9043 		0.417 0.348
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EKD12786 Sox 652 720

Links

Other Sox family TFs
Other Marssonina brunnea TFs

844 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R002403 Calypte anna Aan_R002403 N
Alligator_sinensis_CCG001820.1 Alligator sinensis Alligator_sinensis_CCG001820.1 N
Cmyd_10005054 Chelonia mydas Cmyd_10005054 N
ENSAMEG00000012036 Ailuropoda melanoleuca ENSAMEG00000012036 N
ENSAMXG00000001813 Astyanax mexicanus ENSAMXG00000001813 N
ENSAMXG00000014687 Astyanax mexicanus ENSAMXG00000014687 N
ENSAPLG00000011761 Anas platyrhynchos ENSAPLG00000011761 N
ENSBTAP00000008766-D1 Bos grunniens ENSBTAP00000008766-D1 N
ENSCSAG00000001881 Chlorocebus sabaeus ENSCSAG00000001881 N
ENSGALG00000029154 Gallus gallus ENSGALG00000029154 N
ENSGMOG00000013793 Gadus morhua ENSGMOG00000013793 N
ENSLACG00000013888 Latimeria chalumnae ENSLACG00000013888 N
ENSLOCG00000008705 Lepisosteus oculatus ENSLOCG00000008705 N
ENSMEUG00000007551 Macropus eugenii ENSMEUG00000007551 N
ENSMGAG00000017205 Meleagris gallopavo ENSMGAG00000017205 N
ENSMPUG00000008136 Mustela putorius furo ENSMPUG00000008136 N
ENSNLEG00000010649 Nomascus leucogenys ENSNLEG00000010649 N
ENSOARG00000001486 Ovis aries ENSOARG00000001486 N
ENSONIG00000010369 Oreochromis niloticus ENSONIG00000010369 N
ENSP00000357644 Macaca fascicularis ENSP00000357644 N
ENSPANG00000008972 Papio anubis ENSPANG00000008972 N
ENSPFOG00000008182 Poecilia formosa ENSPFOG00000008182 N
ENSPPYG00000029612 Pongo abelii ENSPPYG00000029612 N
ENSPSIG00000004590 Pelodiscus sinensis ENSPSIG00000004590 N
ENSSHAG00000011064 Sarcophilus harrisii ENSSHAG00000011064 N
ENSSTOG00000005407 Ictidomys tridecemlineatus ENSSTOG00000005407 N
ENSXMAG00000010412 Xiphophorus maculatus ENSXMAG00000010412 N
GATAD2B Tupaia belangeri ENSTBEG00000015791 N
GATAD2B Pan troglodytes ENSPTRG00000001364 N
GATAD2B Pteropus vampyrus ENSPVAG00000011082 N
Gatad2b Rattus norvegicus ENSRNOG00000015553 N
GATAD2B Sorex araneus ENSSARG00000011365 N
GATAD2B Sus scrofa ENSSSCG00000006562 N
gatad2b Xenopus tropicalis XB-GENE-5995517 N
gatad2b Tetraodon nigroviridis ENSTNIG00000002290 N
gatad2b Takifugu rubripes ENSTRUG00000002877 N
GATAD2B Tursiops truncatus ENSTTRG00000014779 N
GATAD2B Vicugna pacos ENSVPAG00000010268 N
GATAD2B Callithrix jacchus ENSCJAG00000010131 N
GATAD2B Choloepus hoffmanni ENSCHOG00000013411 N
GATAD2B Canis familiaris ENSCAFG00000017433 N
GATAD2B Bos taurus ENSBTAG00000006678 N
gatad2b Gasterosteus aculeatus ENSGACG00000000510 N
GATAD2B Microcebus murinus ENSMICG00000008874 N
GATAD2B Gorilla gorilla ENSGGOG00000012553 N
GATAD2B Homo sapiens ENSG00000143614 N
GATAD2B Felis catus ENSFCAG00000002751 N
GATAD2B Loxodonta africana ENSLAFG00000002667 N
GATAD2B Equus caballus ENSECAG00000011357 N
Gatad2b Dipodomys ordii ENSDORG00000013431 N
GATAD2B Dasypus novemcinctus ENSDNOG00000048326 N
GATAD2B Procavia capensis ENSPCAG00000001797 N
GATAD2B Myotis lucifugus ENSMLUG00000004859 N
GATAD2B Macaca mulatta ENSMMUG00000002696 N
GATAD2B Monodelphis domestica ENSMODG00000017336 N
gatad2b Danio rerio ENSDARG00000005834 N
Gatad2b Mus musculus ENSMUSG00000042390 N
GATAD2B Cavia porcellus ENSCPOG00000010326 N
GATAD2B Anolis carolinensis ENSACAG00000008791 N
GATAD2B Oryctolagus cuniculus ENSOCUG00000008135 N
GATAD2B Otolemur garnettii ENSOGAG00000004606 N
GATAD2B Ochotona princeps ENSOPRG00000000027 N
gatad2b Oryzias latipes ENSORLG00000010868 N
Gfo_R009850 Geospiza fortis Gfo_R009850 N
Myotis_brandtii_GATAD2B_10031899 Myotis brandtii Myotis_brandtii_GATAD2B_10031899 N
Ogr01497 Ophisaurus gracilis Ogr01497 N
Pvit_02350 Pogona vitticeps Pvit_02350 N