ORUFI02G11130 (Oryza rufipogon)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 ORUFI02G11130 T331686_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMGB13
M07268_2.00 		Arabidopsis thaliana
HNHYNBNNNHDYCDCCGCCRB
VYGGCGGHGRHDNNNVNRDND		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_col_a 		0.423 0.584
HMGB13
M07269_2.00 		Arabidopsis thaliana
GGHGGHGGYGGHGGN
NCCDCCRCCDCCDCC		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_colamp_a 		0.423 0.584
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ORUFI02G11130.1 Sox 157 222
ORUFI02G11130.1 Sox 285 351
ORUFI02G11130.1 Sox 414 482

Links

Other Sox family TFs
Other Oryza rufipogon TFs

33 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
A1O3_01422 Capronia epimyces A1O3_01422 N
A1O9_04520 Exophiala aquamarina A1O9_04520 N
HMPREF1120_08511 Exophiala dermatitidis HMPREF1120_08511 N
PMAA_041210 Talaromyces marneffei PMAA_041210 N
PMAA_041210 Penicillium marneffei PMAA_041210 N
PV05_05677 Exophiala xenobiotica PV05_05677 N
PV06_00505 Exophiala oligosperma PV06_00505 N
PV08_03710 Exophiala spinifera PV08_03710 N
PV08_04378 Exophiala spinifera PV08_04378 N
PV10_06068 Exophiala mesophila PV10_06068 N
PV11_01479 Exophiala sideris PV11_01479 N
Z518_08768 Rhinocladiella mackenziei Z518_08768 N