POPTR_0001s00240 (Populus trichocarpa)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 POPTR_0001s00240 T332114_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
YAB1
M00890_2.00 		Arabidopsis thaliana
AATAATWA
TWATTATT		 PBM
Franco-Zorrilla et al.(2014)
YAB1 		0.712 0.977
CRC
M07266_2.00 		Arabidopsis thaliana
TWATCATW
WATGATWA		 Dap-seq
OMalley et al.(2016)
CRC_col_a 		0.689 0.727
CRC
M07267_2.00 		Arabidopsis thaliana
GGTTAGTGTTTTGGAGTCGAATATGACTTG
CAAGTCATATTCGACTCCAAAACACTAACC		 Dap-seq
OMalley et al.(2016)
CRC_colamp_a 		0.689 0.727
YAB5
M02486_2.00 		Arabidopsis thaliana
NNNNHRN
NYDNNNN		 PBM
Weirauch et al.(2014)
pTH7575 		0.678 0.909
YAB5
M00889_2.00 		Arabidopsis thaliana
NATRATTADNNN
NNNHTAATYATN		 PBM
Franco-Zorrilla et al.(2014)
YAB5 		0.678 0.909
INO
M02485_2.00 		Arabidopsis thaliana
NHNNNYRNNN
NNNYRNNNDN		 PBM
Weirauch et al.(2014)
pTH7516 		0.567 0.727
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0001s00240.1 Sox 129 172

Links

Other Sox family TFs
Other Populus trichocarpa TFs

529 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
estExt_fgenesh1_pg.C_2790008 Phytophthora capsici estExt_fgenesh1_pg.C_2790008 N
fgenesh_scip_prom.28083.3952 Phytophthora lateralis fgenesh_scip_prom.28083.3952 N
fgenesh_scip_prom.46568.6049 Phytophthora kernoviae fgenesh_scip_prom.46568.6049 N
maker-par_contig_42-fgenesh-gene-0.2 Pythium arrhenomanes maker-par_contig_42-fgenesh-gene-0.2 N
maker-pir_contig_468-snap-gene-0.7 Pythium irregulare maker-pir_contig_468-snap-gene-0.7 N
maker-piw_contig_2045-snap-gene-0.2 Pythium iwayamai maker-piw_contig_2045-snap-gene-0.2 N
maker-pve_contig_71-fgenesh-gene-0.1 Pythium vexans maker-pve_contig_71-fgenesh-gene-0.1 N
Phyra80851 Phytophthora ramorum Phyra80851 N
Physo143072 Phytophthora sojae Physo143072 N
PITG_06347 Phytophthora infestans PITG_06347 N
PYU1_G008909 Pythium ultimum PYU1_G008909 N