TCM_042534 (Theobroma cacao)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 TCM_042534 T332837_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMG-1
M02720_2.00 		Pisum sativum
STYGTDHTY
RADHACRAS		 SELEX
Mathelier et al.(2014)
MA0044.1 		0.581 0.667
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EOY17820 Sox 56 105
EOY17820 Sox 102 161
EOY17821 Sox 56 125
EOY17822 Sox 56 105

Links

Other Sox family TFs
Other Theobroma cacao TFs

343 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
CGGC5_12853 Colletotrichum gloeosporioides CGGC5_12853 N
estExt_Genewise1Plus.C_110567 Neurospora discreta estExt_Genewise1Plus.C_110567 N
GLRG_10274 Colletotrichum graminicola GLRG_10274 N
MAJ_07699 Metarhizium majus MAJ_07699 N
MAM_06566 Metarhizium album MAM_06566 N
MGU_09149 Metarhizium guizhouense MGU_09149 N
MYCTH_2121737 Myceliophthora thermophila MYCTH_2121737 N
PFICI_14902 Pestalotiopsis fici PFICI_14902 N
S40285_01779 Stachybotrys chlorohalonata S40285_01779 N
S40288_03960 Stachybotrys chartarum S40288_03960 N
TRIVIDRAFT_232488 Trichoderma virens TRIVIDRAFT_232488 N
UCRPA7_2621 Togninia minima UCRPA7_2621 N
UV8b_7573 Ustilaginoidea virens UV8b_7573 N
X797_008957 Metarhizium robertsii X797_008957 N