Traes_3AL_730255B9F (Triticum aestivum)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 Traes_3AL_730255B9F T332983_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
CRC
M07266_2.00 		Arabidopsis thaliana
TWATCATW
WATGATWA		 Dap-seq
OMalley et al.(2016)
CRC_col_a 		0.640 0.763
CRC
M07267_2.00 		Arabidopsis thaliana
GGTTAGTGTTTTGGAGTCGAATATGACTTG
CAAGTCATATTCGACTCCAAAACACTAACC		 Dap-seq
OMalley et al.(2016)
CRC_colamp_a 		0.640 0.763
YAB1
M00890_2.00 		Arabidopsis thaliana
AATAATWA
TWATTATT		 PBM
Franco-Zorrilla et al.(2014)
YAB1 		0.618 0.895
YAB5
M02486_2.00 		Arabidopsis thaliana
NNNNHRN
NYDNNNN		 PBM
Weirauch et al.(2014)
pTH7575 		0.593 0.868
YAB5
M00889_2.00 		Arabidopsis thaliana
NATRATTADNNN
NNNHTAATYATN		 PBM
Franco-Zorrilla et al.(2014)
YAB5 		0.593 0.868
INO
M02485_2.00 		Arabidopsis thaliana
NHNNNYRNNN
NNNYRNNNDN		 PBM
Weirauch et al.(2014)
pTH7516 		0.511 0.684
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Traes_3AL_730255B9F.1 Sox 51 88

Links

Other Sox family TFs
Other Triticum aestivum TFs

478 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AGABI2DRAFT_192725 Agaricus bisporus AGABI2DRAFT_192725 I
BOTBODRAFT_214576 Botryobasidium botryosum BOTBODRAFT_214576 I
CAD26261 Encephalitozoon cuniculi CAD26261 D
CC1G_01962 Coprinopsis cinerea CC1G_01962 I
CERSUDRAFT_94820 Ceriporiopsis subvermispora CERSUDRAFT_94820 I
CNJ00280 Cryptococcus neoformans CNJ00280 I
CY34DRAFT_106181 Suillus luteus CY34DRAFT_106181 I
CY34DRAFT_109842 Suillus luteus CY34DRAFT_109842 I
E5Q_01806 Mixia osmundae E5Q_01806 I
E5Q_03771 Mixia osmundae E5Q_03771 I
EDEG_01594 Edhazardia aedis EDEG_01594 I
EFA86584.1 Polysphondylium pallidum EFA86584.1 I
EHEL_031090 Encephalitozoon hellem EHEL_031090 I
EROM_031050 Encephalitozoon romaleae EROM_031050 I
estExt_fgenesh1_pg.C_10219 Sporobolomyces roseus estExt_fgenesh1_pg.C_10219 I
estExt_fgeneshDP_pg.C_350041 Dictyostelium purpureum estExt_fgeneshDP_pg.C_350041 I
e_gw1.10.235.1 Phycomyces blakesleeanus e_gw1.10.235.1 I
fgenesh1_pg.C_scaffold_15000074 Phanerochaete chrysosporium fgenesh1_pg.C_scaffold_15000074 I
fgeneshMC_pg.1_#_125 Mucor circinelloides fgeneshMC_pg.1_#_125 I
fgeneshMC_pg.1_#_1591 Mucor circinelloides fgeneshMC_pg.1_#_1591 I
fgeneshMC_pg.1_#_69 Mucor circinelloides fgeneshMC_pg.1_#_69 I
fgeneshMC_pg.2_#_8 Mucor circinelloides fgeneshMC_pg.2_#_8 I
fgeneshMC_pg.4_#_986 Mucor circinelloides fgeneshMC_pg.4_#_986 I
fgeneshMC_pg.7_#_41 Mucor circinelloides fgeneshMC_pg.7_#_41 I
fgeneshPB_pg.18__155 Phycomyces blakesleeanus fgeneshPB_pg.18__155 I
fgeneshPB_pg.6__195 Phycomyces blakesleeanus fgeneshPB_pg.6__195 I
FOMPIDRAFT_1128018 Fomitopsis pinicola FOMPIDRAFT_1128018 I
GALMADRAFT_211191 Galerina marginata GALMADRAFT_211191 I
GLOINDRAFT_21145 Rhizophagus irregularis GLOINDRAFT_21145 I
GLOINDRAFT_43985 Rhizophagus irregularis GLOINDRAFT_43985 I
GLOTRDRAFT_92391 Gloeophyllum trabeum GLOTRDRAFT_92391 I
H311_05138 Anncaliia algerae H311_05138 I
J056_004115 Wallemia ichthyophaga J056_004115 I
JAAARDRAFT_47621 Jaapia argillacea JAAARDRAFT_47621 I
K443DRAFT_127593 Laccaria amethystina K443DRAFT_127593 I
KNAG_0A05600 Kazachstania naganishii KNAG_0A05600 I
L804_00025 Cryptococcus gattii L804_00025 I
LACBIDRAFT_293988 Laccaria bicolor LACBIDRAFT_293988 I
M378DRAFT_8263 Amanita muscaria M378DRAFT_8263 I
M404DRAFT_74218 Pisolithus tinctorius M404DRAFT_74218 I
M407DRAFT_11655 Tulasnella calospora M407DRAFT_11655 I
M407DRAFT_4599 Tulasnella calospora M407DRAFT_4599 I
M408DRAFT_258951 Serendipita vermifera M408DRAFT_258951 I
M413DRAFT_413744 Hebeloma cylindrosporum M413DRAFT_413744 I
M896_030550 Ordospora colligata M896_030550 I
MELLADRAFT_35504 Melampsora laricipopulina MELLADRAFT_35504 I
Moror_6758 Moniliophthora roreri Moror_6758 I
MVLG_00113 Microbotryum violaceum MVLG_00113 I
MVLG_02963 Microbotryum violaceum MVLG_02963 I
NAPIS_ORF00184 Nosema apis NAPIS_ORF00184 I
NAPIS_ORF00325 Nosema apis NAPIS_ORF00325 I
NBO_11g0012 Nosema bombycis NBO_11g0012 I
NBO_6g0031 Nosema bombycis NBO_6g0031 I
NBO_85g0005 Nosema bombycis NBO_85g0005 I
NCAS_0B05980 Naumovozyma castellii NCAS_0B05980 I
NCER_100211 Nosema ceranae NCER_100211 I
NCER_100315 Nosema ceranae NCER_100315 I
NDAI_0B03290 Naumovozyma dairenensis NDAI_0B03290 I
NEMVEDRAFT_v1g105595 Nematostella vectensis NEMVEDRAFT_v1g105595 D
NEPG_01845 Nematocida parisii ertm1 NEPG_01845 I
NERG_00880 Nematocida sp NERG_00880 I
PAXRUDRAFT_10369 Paxillus rubicundulus PAXRUDRAFT_10369 I
PGTG_00338 Puccinia graminis PGTG_00338 I
PHACADRAFT_257545 Phanerochaete carnosa PHACADRAFT_257545 I
PHLGIDRAFT_55548 Phlebiopsis gigantea PHLGIDRAFT_55548 I
PIIN_02203 Piriformospora indica PIIN_02203 I
PILCRDRAFT_110903 Piloderma croceum PILCRDRAFT_110903 I
PISMIDRAFT_65337 Pisolithus microcarpus PISMIDRAFT_65337 I
PLEOSDRAFT_173849 Pleurotus ostreatus PLEOSDRAFT_173849 I
POSPLDRAFT_98870 Postia placenta POSPLDRAFT_98870 I
PTTG_03012 Puccinia triticina PTTG_03012 I
PTTG_07330 Puccinia triticina PTTG_07330 I
RHTO_02593 Rhodosporidium toruloides RHTO_02593 I
RHTO_06229 Rhodosporidium toruloides RHTO_06229 I
RO3G_02291 Rhizopus oryzae RO3G_02291 I
RO3G_03200 Rhizopus oryzae RO3G_03200 I
RO3G_11930 Rhizopus oryzae RO3G_11930 I
RO3G_13360 Rhizopus oryzae RO3G_13360 I
RTG_01934 Rhodotorula glutinis RTG_01934 I
Scas_Contig613.11 Saccharomyces castellii Scas_Contig613.11 I
SCHCODRAFT_257987 Schizophyllum commune SCHCODRAFT_257987 I
SCLCIDRAFT_97512 Scleroderma citrinum SCLCIDRAFT_97512 I
SERLA73DRAFT_72643 Serpula lacrymans SERLA73DRAFT_72643 I
SPPG_05107 Spizellomyces punctatus SPPG_05107 I
THOM_0497 Trachipleistophora hominis THOM_0497 I
V565_070630 Rhizoctonia solani V565_070630 I
VCUG_00708 Vavraia culicis VCUG_00708 I
VICG_01325 Vittaforma corneae VICG_01325 I
WALSEDRAFT_59197 Wallemia sebi WALSEDRAFT_59197 I
warA Dictyostelium discoideum DDB_G0291075 I
YALI0_F16852g Yarrowia lipolytica YALI0_F16852g I