Z518_08063 (Rhinocladiella mackenziei)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 Z518_08063 T333369_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ROX1
M00070_2.00 		Saccharomyces cerevisiae
NRAACAATWNN
NNWATTGTTYN		 PBM
Badis et al.(2008)
ROX1_2099 		0.532 0.478
ROX1
M07498_2.00 		Saccharomyces cerevisiae
YYHATTGTTYTS
SARAACAATDRR		 PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0371.1 		0.532 0.478
ROX1
M08607_2.00 		Saccharomyces cerevisiae
BYATTGTN
NACAATRV		 Misc
DeBoer et al.(2011)
YPR065W_1396 		0.532 0.478
ROX1
M11346_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$ROX1_Q6_01 		0.532 0.478
ROX1
M11347_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$ROX1_Q6 		0.532 0.478
mat1-Mc
M11340_2.00 		Schizosaccharomyces pombe
NRMNNAACAAAGAVRYMW
AKRYBTCTTTGTTNNKYN		 Transfac
Matys et al.(2006)
F$MAT1MC_01 		0.447 0.449
mat1-Mc
M11341_2.00 		Schizosaccharomyces pombe
YYHATTGTYD
HRACAATDRR		 Transfac
Matys et al.(2006)
F$MAT1MC_02 		0.447 0.449
Sox15
M00202_2.00 		Mus musculus
WTTVWNNNN
NNNNWBAAW		 PBM
Badis et al.(2009)
Sox15_3457 		0.446 0.362
SOX15
M03508_2.00 		Homo sapiens
AACAATAMCATTGTT
AACAATGKTATTGTT		 SELEX
Jolma et al.(2013)
SOX15_1 		0.446 0.348
SOX15
M03509_2.00 		Homo sapiens
ATCAATAMCATTGAT
ATCAATGKTATTGAT		 SELEX
Jolma et al.(2013)
SOX15_2 		0.446 0.348
SOX15
M03510_2.00 		Homo sapiens
ATGAATAACATTCAT
ATGAATGTTATTCAT		 SELEX
Jolma et al.(2013)
SOX15_3 		0.446 0.348
SOX15
M05893_2.00 		Homo sapiens
YYWTTGTNHN
NDNACAAWRR		 SMiLE-seq
Isakova et al.(2017)
SOX15 		0.446 0.348
SOX15
M11308_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SOX15_Q3 		0.446 0.348
Sox7
M00209_2.00 		Mus musculus
NNNWBAAT
ATTVWNNN		 PBM
Badis et al.(2009)
Sox7_3460 		0.435 0.333
SOX7
M03516_2.00 		Homo sapiens
AACAATRDNHAKTGTT
AACAMTDNHYATTGTT		 SELEX
Jolma et al.(2013)
SOX7_1 		0.435 0.333
SOX7
M03517_2.00 		Homo sapiens
DAACAATKDYAKTGTTN
NAACAMTRHMATTGTTH		 SELEX
Jolma et al.(2013)
SOX7_2 		0.435 0.333
SOX7
M03518_2.00 		Homo sapiens
NATGAATKDCAKTCATN
NATGAMTGHMATTCATN		 SELEX
Jolma et al.(2013)
SOX7_3 		0.435 0.333
SOX7
M05787_2.00 		Homo sapiens
ACAATDNHATTGT
ACAATDNHATTGT		 SELEX
Yin et al.(2017)
SOX7_eDBD_HT-SELEX 		0.435 0.333
SOX7
M11325_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SOX7_Q2 		0.435 0.333
SOX7
M05788_2.00 		Homo sapiens
ACAATDNHATTGT
ACAATDNHATTGT		 SELEX
Yin et al.(2017)
SOX7_eDBD_Methyl-HT-SELEX 		0.435 0.333
Sox12
M00205_2.00 		Mus musculus
HWTTGTBNNN
NNNVACAAWD		 PBM
Badis et al.(2009)
Sox12_3957 		0.434 0.348
SOX12
M05789_2.00 		Homo sapiens
NATTGTTCGGK
MCCGAACAATN		 SELEX
Yin et al.(2017)
SOX12_eDBD_HT-SELEX 		0.434 0.348
SOX12
M05790_2.00 		Homo sapiens
YATTGTTCBKT
AMVGAACAATR		 SELEX
Yin et al.(2017)
SOX12_eDBD_Methyl-HT-SELEX 		0.434 0.348
gei-3
M00711_2.00 		Caenorhabditis elegans
NWNWMWDN
NHWKWNWN		 PBM
Narasimhan et al.(2015)
pTH10038 		0.430 0.348
egl-13
M00710_2.00 		Caenorhabditis elegans
NNAACAATWN
NWATTGTTNN		 PBM
Narasimhan et al.(2015)
pTH9125 		0.426 0.290
Sox102F
M03981_2.00 		Drosophila melanogaster
ATTGTTCGGTGKN
NMCACCGAACAAT		 SELEX
Nitta et al.(2015)
Sox102F_1 		0.426 0.290
Sox102F
M03982_2.00 		Drosophila melanogaster
NAACAATDDCATTGTTN
NAACAATGHHATTGTTN		 SELEX
Nitta et al.(2015)
Sox102F_2 		0.426 0.290
Sox17
M00199_2.00 		Mus musculus
NNNNWSAAT
ATTSWNNNN		 PBM
Badis et al.(2009)
Sox17_2837 		0.425 0.319
Sox17
M03533_2.00 		Mus musculus
AACAATWDCATTGTT
AACAATGHWATTGTT		 SELEX
Jolma et al.(2013)
Sox17_1 		0.425 0.319
Sox17
M03534_2.00 		Mus musculus
ATGAATWNCATTCAT
ATGAATGNWATTCAT		 SELEX
Jolma et al.(2013)
Sox17_2 		0.425 0.319
SOX17
M05896_2.00 		Homo sapiens
DRACAATRVN
NBYATTGTYH		 SMiLE-seq
Isakova et al.(2017)
SOX17 		0.425 0.319
Sox17
M02718_2.00 		Mus musculus
SACAATRNN
NNYATTGTS		 SELEX
Mathelier et al.(2014)
MA0078.1 		0.425 0.319
Sox17
M08040_2.00 		Mus musculus
RVACAAWRRVN
NBYYWTTGTBY		 ChIP-seq
Chen et al.(2011)
GSE19026_Sox17_XENcells 		0.425 0.319
SOX17
M09396_2.00 		Homo sapiens
BCCATTKTNBN
NVNAMAATGGV		 Misc
Kulakovskiy et al.(2013)
SOX17_HUMAN.H11MO.0.C 		0.425 0.319
SOX17
M11323_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SOX17_01 		0.425 0.319
SOX17
M11324_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SOX17_Q2 		0.425 0.319
Cic
M00195_2.00 		Mus musculus
NNTGCTGABN
NVTCAGCANN		 PBM
Badis et al.(2009)
Cic_3454 		0.425 0.333
cic
M06452_2.00 		Drosophila melanogaster
YYCATTSA
TSAATGRR		 B1H
Zhu et al.(2011)
cic_SANGER_5_FBgn0028386 		0.419 0.333
Sry
M00211_2.00 		Mus musculus
ATTRTNNNNN
NNNNNAYAAT		 PBM
Badis et al.(2009)
Sry_2833 		0.419 0.304
Sry
M09408_2.00 		Mus musculus
BWTTGTTWH
DWAACAAWV		 Misc
Kulakovskiy et al.(2013)
SRY_MOUSE.H11MO.0.B 		0.419 0.304
SOX18
M03529_2.00 		Homo sapiens
AACAATDNCATTGTT
AACAATGNHATTGTT		 SELEX
Jolma et al.(2013)
SOX18_1 		0.417 0.304
SOX18
M03530_2.00 		Homo sapiens
ATCAATWDCATTGAT
ATCAATGHWATTGAT		 SELEX
Jolma et al.(2013)
SOX18_2 		0.417 0.304
SOX18
M03531_2.00 		Homo sapiens
ATGAATWYCATTCAT
ATGAATGRWATTCAT		 SELEX
Jolma et al.(2013)
SOX18_3 		0.417 0.304
SOX18
M05791_2.00 		Homo sapiens
VACRAYGV
BCRTYGTB		 SELEX
Yin et al.(2017)
SOX18_eDBD_HT-SELEX 		0.417 0.304
SOX18
M11334_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SOX18_Q5_01 		0.417 0.304
SOX18
M11335_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SOX18_Q5 		0.417 0.304
SOX18
M05792_2.00 		Homo sapiens
BYATTGTN
NACAATRV		 SELEX
Yin et al.(2017)
SOX18_eDBD_Methyl-HT-SELEX 		0.417 0.304
Sox18
M00204_2.00 		Mus musculus
NNNWBAAT
ATTVWNNN		 PBM
Badis et al.(2009)
Sox18_3506 		0.417 0.290
Sox21b
M03983_2.00 		Drosophila melanogaster
NAACAMTWNCAKTGTTB
VAACAMTGNWAKTGTTN		 SELEX
Nitta et al.(2015)
Sox21b_1 		0.416 0.333
D
M03969_2.00 		Drosophila melanogaster
AMVGAACAAT
ATTGTTCBKT		 SELEX
Nitta et al.(2015)
D_1 		0.416 0.319
D
M03970_2.00 		Drosophila melanogaster
NAACAATDNCATTGTTN
NAACAATGNHATTGTTN		 SELEX
Nitta et al.(2015)
D_2 		0.416 0.319
D
M06559_2.00 		Drosophila melanogaster
BCYWTTGTTNT
ANAACAAWRGV		 B1H
Mathelier et al.(2014)
MA0445.1 		0.416 0.319
D
M06448_2.00 		Drosophila melanogaster
BCYATTGTYNW
WNRACAATRGV		 B1H
Zhu et al.(2011)
D_NAR_FBgn0000411 		0.416 0.319
D
M09694_2.00 		Drosophila melanogaster
RACAAWRGVH
DBCYWTTGTY		 Misc
Kulakovskiy et al.(2009)
D 		0.416 0.319
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
KIX02124 Sox 129 197

Links

Other Sox family TFs
Other Rhinocladiella mackenziei TFs

1125 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R008050 Calypte anna Aan_R008050 N
Afo_R011854 Aptenodytes forsteri Afo_R011854 N
Alligator_sinensis_CCG016138.1 Alligator sinensis Alligator_sinensis_CCG016138.1 N
ENSAMEG00000012889 Ailuropoda melanoleuca ENSAMEG00000012889 N
ENSAMXG00000009099 Astyanax mexicanus ENSAMXG00000009099 N
ENSLACG00000009597 Latimeria chalumnae ENSLACG00000009597 N
ENSMPUG00000008085 Mustela putorius furo ENSMPUG00000008085 N
ENSNLEG00000016765 Nomascus leucogenys ENSNLEG00000016765 N
ENSOARG00000006161 Ovis aries ENSOARG00000006161 N
ENSONIG00000015003 Oreochromis niloticus ENSONIG00000015003 N
ENSP00000363241 Macaca fascicularis ENSP00000363241 N
ENSP00000363241-D1 Bos grunniens ENSP00000363241-D1 N
ENSPPYG00000019526 Pongo abelii ENSPPYG00000019526 N
ENSPSIG00000016588 Pelodiscus sinensis ENSPSIG00000016588 N
ENSSHAG00000015909 Sarcophilus harrisii ENSSHAG00000015909 N
ENSSTOG00000022322 Ictidomys tridecemlineatus ENSSTOG00000022322 N
Gfo_R015405 Geospiza fortis Gfo_R015405 N
Myotis_brandtii_ZNF618_10028443 Myotis brandtii Myotis_brandtii_ZNF618_10028443 N
Zfp618 Mus musculus ENSMUSG00000028358 N
Zfp618 Dipodomys ordii ENSDORG00000014008 N
Zfp618 Rattus norvegicus ENSRNOG00000006719 N
znf618 Tetraodon nigroviridis ENSTNIG00000018743 N
ZNF618 Tupaia belangeri ENSTBEG00000000415 N
ZNF618 Tursiops truncatus ENSTTRG00000005353 N
ZNF618 Sus scrofa ENSSSCG00000005484 N
ZNF618 Cavia porcellus ENSCPOG00000010468 N
ZNF618 Canis familiaris ENSCAFG00000003282 N
ZNF618 Pteropus vampyrus ENSPVAG00000011944 N
ZNF618 Bos taurus ENSBTAG00000025659 N
ZNF618 Ochotona princeps ENSOPRG00000005497 N
ZNF618 Procavia capensis ENSPCAG00000000187 N
ZNF618 Homo sapiens ENSG00000157657 N
ZNF618 Otolemur garnettii ENSOGAG00000014816 N
ZNF618 Oryctolagus cuniculus ENSOCUG00000002794 N
ZNF618 Dasypus novemcinctus ENSDNOG00000012611 N
ZNF618 Ornithorhynchus anatinus ENSOANG00000005539 N
ZNF618 Equus caballus ENSECAG00000020621 N
ZNF618 Monodelphis domestica ENSMODG00000004063 N
ZNF618 Macaca mulatta ENSMMUG00000008557 N
ZNF618 Microcebus murinus ENSMICG00000015151 N
ZNF618 Meleagris gallopavo ENSMGAG00000001586 N
ZNF618 Loxodonta africana ENSLAFG00000011286 N
ZNF618 Felis catus ENSFCAG00000013342 N
ZNF618 Gorilla gorilla ENSGGOG00000014177 N
ZNF618 Gallus gallus ENSGALG00000008886 N
znf618 Gasterosteus aculeatus ENSGACG00000016617 N