TVAG_142450 (Trichomonas vaginalis)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 TVAG_142450 T333472_2.00 EuPathDB (2015-Mar-30)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
NCU02326
M02489_2.00 		Neurospora crassa
NNNNTATTRWWAN
NTWWYAATANNNN		 PBM
Weirauch et al.(2014)
pTH8922 		0.453 0.319
SOX21
M03497_2.00 		Homo sapiens
AACAATKKYAKTGTT
AACAMTRMMATTGTT		 SELEX
Jolma et al.(2013)
SOX21_1 		0.419 0.391
SOX21
M03498_2.00 		Homo sapiens
AACAATRKDYAKTGTT
AACAMTRHMYATTGTT		 SELEX
Jolma et al.(2013)
SOX21_2 		0.419 0.391
SOX21
M03499_2.00 		Homo sapiens
TCAATGDYAKTGA
TCAMTRHCATTGA		 SELEX
Jolma et al.(2013)
SOX21_3 		0.419 0.391
SOX21
M03500_2.00 		Homo sapiens
TGAATGKYAKTCA
TGAMTRMCATTCA		 SELEX
Jolma et al.(2013)
SOX21_4 		0.419 0.391
SOX15
M03508_2.00 		Homo sapiens
AACAATAMCATTGTT
AACAATGKTATTGTT		 SELEX
Jolma et al.(2013)
SOX15_1 		0.416 0.420
SOX15
M03509_2.00 		Homo sapiens
ATCAATAMCATTGAT
ATCAATGKTATTGAT		 SELEX
Jolma et al.(2013)
SOX15_2 		0.416 0.420
SOX15
M03510_2.00 		Homo sapiens
ATGAATAACATTCAT
ATGAATGTTATTCAT		 SELEX
Jolma et al.(2013)
SOX15_3 		0.416 0.420
SOX15
M05893_2.00 		Homo sapiens
YYWTTGTNHN
NDNACAAWRR		 SMiLE-seq
Isakova et al.(2017)
SOX15 		0.416 0.420
SOX15
M11308_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SOX15_Q3 		0.416 0.420
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
TVAG_142450 Sox 41 109

Links

Other Sox family TFs
Other Trichomonas vaginalis TFs

264 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action