Cla011101 (Citrullus lanatus)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 Cla011101 T333643_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMGB13
M07268_2.00 		Arabidopsis thaliana
HNHYNBNNNHDYCDCCGCCRB
VYGGCGGHGRHDNNNVNRDND		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_col_a 		0.494 0.704
HMGB13
M07269_2.00 		Arabidopsis thaliana
GGHGGHGGYGGHGGN
NCCDCCRCCDCCDCC		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_colamp_a 		0.494 0.704
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cla011101 Sox 172 238
Cla011101 Sox 289 355
Cla011101 Sox 417 485

Links

Other Sox family TFs
Other Citrullus lanatus TFs

59 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R010877 Calypte anna Aan_R010877 N 0.000
ENSGMOG00000012699 Gadus morhua ENSGMOG00000012699 N 0.000
ENSLOCG00000003008 Lepisosteus oculatus ENSLOCG00000003008 N 0.000
ENSLOCG00000017277 Lepisosteus oculatus ENSLOCG00000017277 N 0.000
ENSONIG00000015120 Oreochromis niloticus ENSONIG00000015120 N 0.000
ENSORLG00000019825 Oryzias latipes ENSORLG00000019825 N 0.000
ENSPFOG00000009224 Poecilia formosa ENSPFOG00000009224 N 0.000
ENSPMAG00000002300 Petromyzon marinus ENSPMAG00000002300 N 0.000
ENSSHAG00000012679 Sarcophilus harrisii ENSSHAG00000012679 N 0.000
ENSXMAG00000014347 Xiphophorus maculatus ENSXMAG00000014347 N 0.000
l3mbtl3 Danio rerio ENSDARG00000025983 N 0.000
L3MBTL4 Danio rerio ENSDARG00000094780 N 0.000
L3MBTL4 Takifugu rubripes ENSTRUG00000001294 N 0.000
L3MBTL4 Tetraodon nigroviridis ENSTNIG00000004386 N 0.000
L3mbtl4 Rattus norvegicus ENSRNOG00000025273 N 0.000
L3MBTL4 Otolemur garnettii ENSOGAG00000006203 N 0.000
L3mbtl4 Mus musculus ENSMUSG00000041565 N 0.000
L3MBTL4 Monodelphis domestica ENSMODG00000021457 N 0.000
L3MBTL4 Microcebus murinus ENSMICG00000015626 N 0.000
L3MBTL4 Gasterosteus aculeatus ENSGACG00000001138 N 0.000
L3MBTL4 Erinaceus europaeus ENSEEUG00000009625 N 0.000
L3mbtl4 Dipodomys ordii ENSDORG00000013048 N 0.000
LotgiG216594 Lottia gigantea LotgiG216594 N 0.000
Sakowv30043999m.g Saccoglossus kowalevskii Sakowv30043999m.g N 0.000