cassava18626.valid.m1 (Manihot esculenta)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 cassava18626.valid.m1 T333925_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMG-1
M02720_2.00 		Pisum sativum
STYGTDHTY
RADHACRAS		 SELEX
Mathelier et al.(2014)
MA0044.1 		0.630 0.739
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava18626.valid.m1 Sox 38 107

Links

Other Sox family TFs
Other Manihot esculenta TFs

318 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
CHGG_02034 Chaetomium globosum CHGG_02034 N 0.000