fgenesh1_pg.C_scaffold_9000255 (Phanerochaete chrysosporium)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 fgenesh1_pg.C_scaffold_9000255 T334116_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
NHP6A
M01566_2.00 		Saccharomyces cerevisiae
NHRYWWWN
NWWWRYDN		 PBM
Zhu et al.(2009)
Nhp6a 		0.493 0.565
NHP6A
M08606_2.00 		Saccharomyces cerevisiae
DNDHNNWTATATADWRDNNDN
NHNNHYWHTATATAWNNDHNH		 Misc
DeBoer et al.(2011)
YPR052C_879 		0.493 0.565
NHP6B
M01565_2.00 		Saccharomyces cerevisiae
NNWHWRYDNN
NNHRYWDWNN		 PBM
Zhu et al.(2009)
Nhp6b 		0.487 0.522
NHP6B
M08603_2.00 		Saccharomyces cerevisiae
HNTHHNWWTATAWWWWRNDN
NHNYWWWWTATAWWNDDAND		 Misc
DeBoer et al.(2011)
YBR089C-A_792 		0.487 0.522
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh1_pg.C_scaffold_9000255 Sox 32 100

Links

Other Sox family TFs
Other Phanerochaete chrysosporium TFs

361 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R007898 Calypte anna Aan_R007898 N
ACEP21807 Atta cephalotes ACEP21807 N
AFAF014618 Anopheles farauti AFAF014618 I
Afo_R003668 Aptenodytes forsteri Afo_R003668 N
Alligator_sinensis_CCG004879.1 Alligator sinensis Alligator_sinensis_CCG004879.1 N
A_05788 Schistosoma haematobium A_05788 N
Brh_R001528 Buceros rhinoceros Brh_R001528 N
Cflo_03420--XP_394146.3_APIME Camponotus floridanus Cflo_03420--XP_394146.3_APIME I
CLEC009552 Cimex lectularius CLEC009552 N
Cmyd_10020168 Chelonia mydas Cmyd_10020168 N
csin104979 Clonorchis sinensis csin104979 N
D915_00831 Fasciola hepatica D915_00831 N
DILT_0001413501 Diphyllobothrium latum DILT_0001413501 N
ENSAMEG00000014765 Ailuropoda melanoleuca ENSAMEG00000014765 N
ENSAMXG00000001377 Astyanax mexicanus ENSAMXG00000001377 N
ENSAMXG00000008897 Astyanax mexicanus ENSAMXG00000008897 N
ENSAPLG00000012534 Anas platyrhynchos ENSAPLG00000012534 N
ENSCSAG00000003006 Chlorocebus sabaeus ENSCSAG00000003006 N
ENSCSAG00000014652 Chlorocebus sabaeus ENSCSAG00000014652 N
ENSDORG00000008569 Dipodomys ordii ENSDORG00000008569 N
ENSFALG00000005247 Ficedula albicollis ENSFALG00000005247 N
ENSGMOG00000006637 Gadus morhua ENSGMOG00000006637 N
ENSGMOG00000018211 Gadus morhua ENSGMOG00000018211 N
ENSLACG00000015924 Latimeria chalumnae ENSLACG00000015924 N
ENSLOCG00000016561 Lepisosteus oculatus ENSLOCG00000016561 N
ENSMEUG00000011682 Macropus eugenii ENSMEUG00000011682 N
ENSMPUG00000001668 Mustela putorius furo ENSMPUG00000001668 N
ENSMPUG00000005118 Mustela putorius furo ENSMPUG00000005118 N
ENSNLEG00000002946 Nomascus leucogenys ENSNLEG00000002946 N
ENSNLEG00000013870 Nomascus leucogenys ENSNLEG00000013870 N
ENSOARG00000010869 Ovis aries ENSOARG00000010869 N
ENSOARG00000011739 Ovis aries ENSOARG00000011739 N
ENSONIG00000014696 Oreochromis niloticus ENSONIG00000014696 N
ENSONIG00000016544 Oreochromis niloticus ENSONIG00000016544 N
ENSP00000262901 Macaca fascicularis ENSP00000262901 N
ENSP00000358210-D1 Bos grunniens ENSP00000358210-D1 N
ENSP00000405290 Macaca fascicularis ENSP00000405290 N
ENSPANG00000011218 Papio anubis ENSPANG00000011218 N
ENSPANG00000014704 Papio anubis ENSPANG00000014704 N
ENSPCAG00000000784 Procavia capensis ENSPCAG00000000784 N
ENSPPYG00000010165 Pongo abelii ENSPPYG00000010165 N
ENSPPYG00000016868 Pongo abelii ENSPPYG00000016868 N
ENSPSIG00000002579 Pelodiscus sinensis ENSPSIG00000002579 N
ENSSARG00000014127 Sorex araneus ENSSARG00000014127 N
ENSSHAG00000016220 Sarcophilus harrisii ENSSHAG00000016220 N
ENSSTOG00000003396 Ictidomys tridecemlineatus ENSSTOG00000003396 N
ENSSTOG00000027359 Ictidomys tridecemlineatus ENSSTOG00000027359 N
ENSTNIG00000019722 Tetraodon nigroviridis ENSTNIG00000019722 N
ENSTSYG00000007116 Tarsius syrichta ENSTSYG00000007116 N
ENSXMAG00000019075 Xiphophorus maculatus ENSXMAG00000019075 N
Gfo_R003852 Geospiza fortis Gfo_R003852 N
HelroG158226 Helobdella robusta HelroG158226 N
Myotis_brandtii_SIM1_10034719 Myotis brandtii Myotis_brandtii_SIM1_10034719 N
NPAS1 Bos taurus ENSBTAG00000015576 N
NPAS1 Canis familiaris ENSCAFG00000032405 N
NPAS1 Callithrix jacchus ENSCJAG00000011666 N
NPAS1 Cavia porcellus ENSCPOG00000023069 N
NPAS1 Dasypus novemcinctus ENSDNOG00000035321 N
NPAS1 Felis catus ENSFCAG00000004833 N
NPAS1 Homo sapiens ENSG00000130751 N
NPAS1 Gorilla gorilla ENSGGOG00000013398 N
NPAS1 Microcebus murinus ENSMICG00000006346 N
NPAS1 Macaca mulatta ENSMMUG00000011330 N
Npas1 Mus musculus ENSMUSG00000001988 N
NPAS1 Otolemur garnettii ENSOGAG00000012829 N
NPAS1 Ochotona princeps ENSOPRG00000014860 N
NPAS1 Pan troglodytes ENSPTRG00000011199 N
Npas1 Rattus norvegicus ENSRNOG00000015376 N
NPAS1 Sus scrofa ENSSSCG00000003108 N
NPAS1 Tursiops truncatus ENSTTRG00000011416 N
NV16594 Nasonia vitripennis NV16594 I
Ogr12757 Ophisaurus gracilis Ogr12757 N
Pvit_09298 Pogona vitticeps Pvit_09298 N
PXEA_0002490601 Protopolystoma xenopodis PXEA_0002490601 N
RPRC001595 Rhodnius prolixus RPRC001595 N
SIM1 Anolis carolinensis ENSACAG00000010256 N
SIM1 Bos taurus ENSBTAG00000002294 N
SIM1 Canis familiaris ENSCAFG00000003538 N
SIM1 Choloepus hoffmanni ENSCHOG00000005099 N
SIM1 Callithrix jacchus ENSCJAG00000001495 N
SIM1 Cavia porcellus ENSCPOG00000013987 N
SIM1 Dasypus novemcinctus ENSDNOG00000010261 N
SIM1 Equus caballus ENSECAG00000009161 N
SIM1 Erinaceus europaeus ENSEEUG00000009806 N
SIM1 Echinops telfairi ENSETEG00000010692 N
SIM1 Felis catus ENSFCAG00000005942 N
SIM1 Homo sapiens ENSG00000112246 N
SIM1 Gallus gallus ENSGALG00000015466 N
SIM1 Gorilla gorilla ENSGGOG00000017108 N
SIM1 Loxodonta africana ENSLAFG00000006594 N
SIM1 Microcebus murinus ENSMICG00000008851 N
SIM1 Myotis lucifugus ENSMLUG00000002874 N
SIM1 Macaca mulatta ENSMMUG00000022285 N
SIM1 Monodelphis domestica ENSMODG00000018087 N
Sim1 Mus musculus ENSMUSG00000019913 N
SIM1 Ornithorhynchus anatinus ENSOANG00000008943 N
SIM1 Oryctolagus cuniculus ENSOCUG00000002759 N
SIM1 Otolemur garnettii ENSOGAG00000009865 N
SIM1 Ochotona princeps ENSOPRG00000013168 N
SIM1 Procavia capensis ENSPCAG00000008763 N
SIM1 Pan troglodytes ENSPTRG00000018447 N
SIM1 Pteropus vampyrus ENSPVAG00000012822 N
Sim1 Rattus norvegicus ENSRNOG00000037600 N
SIM1 Sorex araneus ENSSARG00000000736 N
SIM1 Sus scrofa ENSSSCG00000004357 N
SIM1 Tupaia belangeri ENSTBEG00000005949 N
SIM1 Taeniopygia guttata ENSTGUG00000012278 N
SIM1 Takifugu rubripes ENSTRUG00000010040 N
SIM1 Tursiops truncatus ENSTTRG00000008248 N
SIM1 Vicugna pacos ENSVPAG00000001407 N
sim1 Xenopus tropicalis XB-GENE-485816 N
sim1a Danio rerio ENSDARG00000023316 N
sim1a Gasterosteus aculeatus ENSGACG00000014149 N
sim1b Danio rerio ENSDARG00000013789 N
sim1b Gasterosteus aculeatus ENSGACG00000009479 N
sim1b Tetraodon nigroviridis ENSTNIG00000012304 N
sim1b Takifugu rubripes ENSTRUG00000018267 N
Sjc_0126700 Schistosoma japonicum Sjc_0126700 N
Smp_165270 Schistosoma mansoni Smp_165270 N
SMRZ_0000943001 Schistosoma margrebowiei SMRZ_0000943001 N
SMTD_0000610501 Schistosoma mattheei SMTD_0000610501 N
SROB_0001806001 Schistosoma rodhaini SROB_0001806001 N
SSLN_0000569901 Schistocephalus solidus SSLN_0000569901 N
T265_14441 Opisthorchis viverrini T265_14441 N
Tal_R009812 Tyto alba Tal_R009812 N
tetur06g06010 Tetranychus urticae tetur06g06010 N
TRE_0000325801 Trichobilharzia regenti TRE_0000325801 N