CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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fgenesh2_pg.scaffold_188000104
(
Branchiostoma floridae
)
Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00505 (HMG_box)
IPR000910
fgenesh2_pg.scaffold_188000104
T334148_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
fgenesh2_pg.scaffold_188000104
Sox
1039
1087
DTAHPDIARSLNNLGNAWRNLSNHRKAVGYYEQALQMNRTVYGEDISHP
Links
Other
Sox
family TFs
Other
Branchiostoma floridae
TFs
4 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
POPTR_0019s02060
Populus trichocarpa
POPTR_0019s02060
N
POPTR_0019s02180
Populus trichocarpa
POPTR_0019s02180
N
POPTR_0019s02190
Populus trichocarpa
POPTR_0019s02190
N
POPTR_0123s00230
Populus trichocarpa
POPTR_0123s00230
N
POPTR_0190s00220
Populus trichocarpa
POPTR_0190s00220
N
SapurV1A.0436s0010
Salix purpurea
SapurV1A.0436s0010
N
SapurV1A.0436s0020
Salix purpurea
SapurV1A.0436s0020
N
SapurV1A.0436s0070
Salix purpurea
SapurV1A.0436s0070
N
SapurV1A.0436s0160
Salix purpurea
SapurV1A.0436s0160
N
SapurV1A.0880s0030
Salix purpurea
SapurV1A.0880s0030
N
SapurV1A.1112s0010
Salix purpurea
SapurV1A.1112s0010
N
SapurV1A.1254s0010
Salix purpurea
SapurV1A.1254s0010
N
SapurV1A.1525s0010
Salix purpurea
SapurV1A.1525s0010
N
SapurV1A.1614s0020
Salix purpurea
SapurV1A.1614s0020
N
SapurV1A.1860s0010
Salix purpurea
SapurV1A.1860s0010
N
SapurV1A.2141s0020
Salix purpurea
SapurV1A.2141s0020
N
SapurV1A.2188s0010
Salix purpurea
SapurV1A.2188s0010
N
SapurV1A.4753s0010
Salix purpurea
SapurV1A.4753s0010
N
XM_002332506.1
Populus trichocarpa
POPTR_0019s02070
N