fgenesh2_pg.scaffold_188000104 (Branchiostoma floridae)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 fgenesh2_pg.scaffold_188000104 T334148_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_pg.scaffold_188000104 Sox 1039 1087

Links

Other Sox family TFs
Other Branchiostoma floridae TFs

4 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
POPTR_0019s02060 Populus trichocarpa POPTR_0019s02060 N
POPTR_0019s02180 Populus trichocarpa POPTR_0019s02180 N
POPTR_0019s02190 Populus trichocarpa POPTR_0019s02190 N
POPTR_0123s00230 Populus trichocarpa POPTR_0123s00230 N
POPTR_0190s00220 Populus trichocarpa POPTR_0190s00220 N
SapurV1A.0436s0010 Salix purpurea SapurV1A.0436s0010 N
SapurV1A.0436s0020 Salix purpurea SapurV1A.0436s0020 N
SapurV1A.0436s0070 Salix purpurea SapurV1A.0436s0070 N
SapurV1A.0436s0160 Salix purpurea SapurV1A.0436s0160 N
SapurV1A.0880s0030 Salix purpurea SapurV1A.0880s0030 N
SapurV1A.1112s0010 Salix purpurea SapurV1A.1112s0010 N
SapurV1A.1254s0010 Salix purpurea SapurV1A.1254s0010 N
SapurV1A.1525s0010 Salix purpurea SapurV1A.1525s0010 N
SapurV1A.1614s0020 Salix purpurea SapurV1A.1614s0020 N
SapurV1A.1860s0010 Salix purpurea SapurV1A.1860s0010 N
SapurV1A.2141s0020 Salix purpurea SapurV1A.2141s0020 N
SapurV1A.2188s0010 Salix purpurea SapurV1A.2188s0010 N
SapurV1A.4753s0010 Salix purpurea SapurV1A.4753s0010 N
XM_002332506.1 Populus trichocarpa POPTR_0019s02070 N