CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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est_cluster_kg.Chr_06__96__3201860:2
(
Micromonas sp RCC299
)
Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00505 (HMG_box)
IPR000910
est_cluster_kg.Chr_06__96__3201860:2
T334452_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
108452
Sox
15
91
PKRARTAYLVFCDRYREQIMRAVHPQPNAKFTREEMQAVTTKLAELWKNISPNELKECKAEADILKGQYEAEKAKFP
108452
Sox
119
195
PKRARTAYLIFCDKYRNQIMKEVHSNPNTKFTREEMQQVTTRLANMWRNVTPTELASCKMEADLCKEEYKKQKDSYR
108452
Sox
218
286
PKRPRTAYLLFAEDCRSKLKKTQPDLGFTDVSKVVSSEWKELPENKKQQYVRNAEKEQEKHRVLKAQWE
Links
Other
Sox
family TFs
Other
Micromonas sp RCC299
TFs
3 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
comr
Drosophila melanogaster
FBgn0034667
N
GA12326
Drosophila pseudoobscura
FBgn0072372
N
GE13668
Drosophila yakuba
FBgn0231325
N
GF13274
Drosophila ananassae
FBgn0090306
N
GG20736
Drosophila erecta
FBgn0112923
N
GH20771
Drosophila grimshawi
FBgn0128234
N
GI20854
Drosophila mojavensis
FBgn0143588
N
GL17508
Drosophila persimilis
FBgn0155111
N