Eucgr.E00847 (Eucalyptus grandis)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 Eucgr.E00847 T334466_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMGB13
M07268_2.00 		Arabidopsis thaliana
HNHYNBNNNHDYCDCCGCCRB
VYGGCGGHGRHDNNNVNRDND		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_col_a 		0.479 0.663
HMGB13
M07269_2.00 		Arabidopsis thaliana
GGHGGHGGYGGHGGN
NCCDCCRCCDCCDCC		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_colamp_a 		0.479 0.663
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Eucgr.E00847.1 Sox 180 248
Eucgr.E00847.1 Sox 297 363
Eucgr.E00847.1 Sox 420 488

Links

Other Sox family TFs
Other Eucalyptus grandis TFs

52 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GUITHDRAFT_100592 Guillardia theta GUITHDRAFT_100592 N 0.000
GUITHDRAFT_100831 Guillardia theta GUITHDRAFT_100831 N 0.000
GUITHDRAFT_105607 Guillardia theta GUITHDRAFT_105607 N 0.000
GUITHDRAFT_105608 Guillardia theta GUITHDRAFT_105608 N 0.000
GUITHDRAFT_105609 Guillardia theta GUITHDRAFT_105609 N 0.000
GUITHDRAFT_107827 Guillardia theta GUITHDRAFT_107827 N 0.000
GUITHDRAFT_107828 Guillardia theta GUITHDRAFT_107828 N 0.000
GUITHDRAFT_107834 Guillardia theta GUITHDRAFT_107834 N 0.000
GUITHDRAFT_107835 Guillardia theta GUITHDRAFT_107835 N 0.000
GUITHDRAFT_107836 Guillardia theta GUITHDRAFT_107836 N 0.000
GUITHDRAFT_110980 Guillardia theta GUITHDRAFT_110980 N 0.000
GUITHDRAFT_114314 Guillardia theta GUITHDRAFT_114314 N 0.000
GUITHDRAFT_114315 Guillardia theta GUITHDRAFT_114315 N 0.000
GUITHDRAFT_114316 Guillardia theta GUITHDRAFT_114316 N 0.000
GUITHDRAFT_114990 Guillardia theta GUITHDRAFT_114990 N 0.000
GUITHDRAFT_116128 Guillardia theta GUITHDRAFT_116128 N 0.000
GUITHDRAFT_116156 Guillardia theta GUITHDRAFT_116156 N 0.000
GUITHDRAFT_116484 Guillardia theta GUITHDRAFT_116484 N 0.000
GUITHDRAFT_120951 Guillardia theta GUITHDRAFT_120951 N 0.000
GUITHDRAFT_122902 Guillardia theta GUITHDRAFT_122902 N 0.000
GUITHDRAFT_122903 Guillardia theta GUITHDRAFT_122903 N 0.000
GUITHDRAFT_122904 Guillardia theta GUITHDRAFT_122904 N 0.000
GUITHDRAFT_152419 Guillardia theta GUITHDRAFT_152419 N 0.000
GUITHDRAFT_153078 Guillardia theta GUITHDRAFT_153078 N 0.000
GUITHDRAFT_154577 Guillardia theta GUITHDRAFT_154577 N 0.000
GUITHDRAFT_154579 Guillardia theta GUITHDRAFT_154579 N 0.000
GUITHDRAFT_155567 Guillardia theta GUITHDRAFT_155567 N 0.000
GUITHDRAFT_156158 Guillardia theta GUITHDRAFT_156158 N 0.000
GUITHDRAFT_156159 Guillardia theta GUITHDRAFT_156159 N 0.000