Lus10016025.g (Linum usitatissimum)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 Lus10016025.g T334565_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMG-1
M02720_2.00 		Pisum sativum
STYGTDHTY
RADHACRAS		 SELEX
Mathelier et al.(2014)
MA0044.1 		0.686 0.797
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10016025 Sox 38 107

Links

Other Sox family TFs
Other Linum usitatissimum TFs

307 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSCPOG00000012471 Cavia porcellus ENSCPOG00000012471 N
ENSCSAG00000006985 Chlorocebus sabaeus ENSCSAG00000006985 N
ENSMMUG00000018707 Macaca mulatta ENSMMUG00000018707 N
ENSNLEG00000003735 Nomascus leucogenys ENSNLEG00000003735 N
ENSPANG00000017316 Papio anubis ENSPANG00000017316 N
ENSSSCG00000016776 Sus scrofa ENSSSCG00000016776 N
ENSSTOG00000021079 Ictidomys tridecemlineatus ENSSTOG00000021079 N
ENSTBEG00000001361 Tupaia belangeri ENSTBEG00000001361 N
Myotis_brandtii_ZNF746_10025634 Myotis brandtii Myotis_brandtii_ZNF746_10025634 N
Zfp746 Mus musculus ENSMUSG00000057691 N
Zfp746 Rattus norvegicus ENSRNOG00000007064 N
ZNF746 Homo sapiens ENSG00000181220 N
ZNF746 Bos taurus ENSBTAG00000031106 N
ZNF746 Tursiops truncatus ENSTTRG00000002642 N
ZNF746 Choloepus hoffmanni ENSCHOG00000005920 N
ZNF746 Callithrix jacchus ENSCJAG00000010276 N
ZNF746 Dasypus novemcinctus ENSDNOG00000040375 N
ZNF746 Pteropus vampyrus ENSPVAG00000010875 N
ZNF746 Pan troglodytes ENSPTRG00000028361 N
ZNF746 Microcebus murinus ENSMICG00000006405 N
ZNF746 Ochotona princeps ENSOPRG00000010592 N
ZNF746 Otolemur garnettii ENSOGAG00000028106 N
ZNF746 Oryctolagus cuniculus ENSOCUG00000008431 N
ZNF746 Gorilla gorilla ENSGGOG00000015841 N
ZNF746 Loxodonta africana ENSLAFG00000006725 N
ZNF746 Myotis lucifugus ENSMLUG00000017109 N