MDP0000291729 (Malus domestica)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 MDP0000291729 T334610_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
CRC
M07266_2.00 		Arabidopsis thaliana
TWATCATW
WATGATWA		 Dap-seq
OMalley et al.(2016)
CRC_col_a 		0.741 0.907
CRC
M07267_2.00 		Arabidopsis thaliana
GGTTAGTGTTTTGGAGTCGAATATGACTTG
CAAGTCATATTCGACTCCAAAACACTAACC		 Dap-seq
OMalley et al.(2016)
CRC_colamp_a 		0.741 0.907
YAB1
M00890_2.00 		Arabidopsis thaliana
AATAATWA
TWATTATT		 PBM
Franco-Zorrilla et al.(2014)
YAB1 		0.660 0.744
YAB5
M02486_2.00 		Arabidopsis thaliana
NNNNHRN
NYDNNNN		 PBM
Weirauch et al.(2014)
pTH7575 		0.630 0.698
YAB5
M00889_2.00 		Arabidopsis thaliana
NATRATTADNNN
NNNHTAATYATN		 PBM
Franco-Zorrilla et al.(2014)
YAB5 		0.630 0.698
INO
M02485_2.00 		Arabidopsis thaliana
NHNNNYRNNN
NNNYRNNNDN		 PBM
Weirauch et al.(2014)
pTH7516 		0.560 0.605
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
MDP0000291729 Sox 123 168

Links

Other Sox family TFs
Other Malus domestica TFs

513 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BGIOSGA007838 Oryza indica BGIOSGA007838 I
BGIOSGA021054 Oryza indica BGIOSGA021054 I
GRMZM2G105348 Zea mays GRMZM2G105348 I
GRMZM2G118047 Zea mays GRMZM2G118047 I
HSFC2A Oryza sativa OS02G0232000 I
LPERR02G08320 Leersia perrieri LPERR02G08320 I
LPERR06G14980 Leersia perrieri LPERR06G14980 I
MLOC_68417 Hordeum vulgare MLOC_68417 I
OB06G25820 Oryza brachyantha OB06G25820 I
OBART02G33140 Oryza barthii OBART02G33140 I
OBART06G18200 Oryza barthii OBART06G18200 I
OGLUM02G09850 Oryza glumaepatula OGLUM02G09850 I
OGLUM06G19290 Oryza glumaepatula OGLUM06G19290 I
OLONG_005056 Oryza longistaminata OLONG_005056 I
OLONG_008747 Oryza longistaminata OLONG_008747 I
OMERI02G11000 Oryza meridionalis OMERI02G11000 I
OMERI06G18730 Oryza meridionalis OMERI06G18730 I
ONIVA02G10840 Oryza nivara ONIVA02G10840 I
ONIVA06G21600 Oryza nivara ONIVA06G21600 I
OPUNC02G08730 Oryza punctata OPUNC02G08730 I
OPUNC06G16360 Oryza punctata OPUNC06G16360 I
ORGLA02G0087700 Oryza glaberrima ORGLA02G0087700 I
ORUFI02G09810 Oryza rufipogon ORUFI02G09810 I
ORUFI06G19310 Oryza rufipogon ORUFI06G19310 I
Pavir.J17014 Panicum virgatum Pavir.J17014 I
Sb04g008300 Sorghum bicolor Sb04g008300 I
Sb10g021800 Sorghum bicolor Sb10g021800 I
TRAES3BF025700030CFD_g Triticum aestivum TRAES3BF025700030CFD_g I
Traes_4BL_B64C157DC Triticum aestivum Traes_4BL_B64C157DC I
Traes_4DL_9A51D1EB2 Triticum aestivum Traes_4DL_9A51D1EB2 I
Traes_4DL_FA07D8414 Triticum aestivum Traes_4DL_FA07D8414 I