Pavir.J07596 (Panicum virgatum)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 Pavir.J07596 T334683_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMGB13
M07268_2.00 		Arabidopsis thaliana
HNHYNBNNNHDYCDCCGCCRB
VYGGCGGHGRHDNNNVNRDND		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_col_a 		0.464 0.629
HMGB13
M07269_2.00 		Arabidopsis thaliana
GGHGGHGGYGGHGGN
NCCDCCRCCDCCDCC		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_colamp_a 		0.464 0.629
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J07596.1.p Sox 163 228
Pavir.J07596.1.p Sox 285 351
Pavir.J07596.1.p Sox 410 478

Links

Other Sox family TFs
Other Panicum virgatum TFs

61 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000007825 Ailuropoda melanoleuca ENSAMEG00000007825 N
ENSAPLG00000011121 Anas platyrhynchos ENSAPLG00000011121 N
ENSCSAG00000016589 Chlorocebus sabaeus ENSCSAG00000016589 N
ENSFALG00000011622 Ficedula albicollis ENSFALG00000011622 N
ENSGALG00000014009 Gallus gallus ENSGALG00000014009 N
ENSLACG00000022431 Latimeria chalumnae ENSLACG00000022431 N
ENSMEUG00000014341 Macropus eugenii ENSMEUG00000014341 N
ENSMPUG00000014637 Mustela putorius furo ENSMPUG00000014637 N
ENSNLEG00000026803 Nomascus leucogenys ENSNLEG00000026803 N
ENSOARG00000013771 Ovis aries ENSOARG00000013771 N
ENSP00000354526-D1 Bos grunniens ENSP00000354526-D1 N
ENSP00000357118 Macaca fascicularis ENSP00000357118 N
ENSPANG00000010327 Papio anubis ENSPANG00000010327 N
ENSPPYG00000017002 Pongo abelii ENSPPYG00000017002 N
ENSSHAG00000017557 Sarcophilus harrisii ENSSHAG00000017557 N
ENSTSYG00000008001 Tarsius syrichta ENSTSYG00000008001 N
Gfo_R016211 Geospiza fortis Gfo_R016211 N
L3MBTL3 Macaca mulatta ENSMMUG00000021498 N
L3MBTL3 Oryctolagus cuniculus ENSOCUG00000016226 N
L3MBTL3 Otolemur garnettii ENSOGAG00000001632 N
L3MBTL3 Ochotona princeps ENSOPRG00000003872 N
L3MBTL3 Pan troglodytes ENSPTRG00000023858 N
L3MBTL3 Vicugna pacos ENSVPAG00000002988 N
L3MBTL3 Sorex araneus ENSSARG00000012237 N
L3MBTL3 Tursiops truncatus ENSTTRG00000010125 N
L3MBTL3 Sus scrofa ENSSSCG00000004203 N
L3MBTL3 Tupaia belangeri ENSTBEG00000013158 N
L3MBTL3 Taeniopygia guttata ENSTGUG00000011709 N
L3MBTL3 Anolis carolinensis ENSACAG00000014140 N
L3MBTL3 Bos taurus ENSBTAG00000017393 N
L3MBTL3 Canis familiaris ENSCAFG00000001115 N
L3MBTL3 Choloepus hoffmanni ENSCHOG00000011296 N
L3MBTL3 Callithrix jacchus ENSCJAG00000003235 N
L3MBTL3 Cavia porcellus ENSCPOG00000006280 N
L3MBTL3 Dasypus novemcinctus ENSDNOG00000019298 N
L3mbtl3 Dipodomys ordii ENSDORG00000013929 N
L3MBTL3 Equus caballus ENSECAG00000006343 N
L3MBTL3 Erinaceus europaeus ENSEEUG00000008805 N
L3MBTL3 Felis catus ENSFCAG00000001466 N
L3MBTL3 Homo sapiens ENSG00000198945 N
L3MBTL3 Gorilla gorilla ENSGGOG00000000549 N
L3MBTL3 Loxodonta africana ENSLAFG00000014675 N
L3MBTL3 Meleagris gallopavo ENSMGAG00000013190 N
L3MBTL3 Microcebus murinus ENSMICG00000006114 N
L3MBTL3 Myotis lucifugus ENSMLUG00000012323 N
L3MBTL3 Monodelphis domestica ENSMODG00000017623 N
Myotis_brandtii_L3MBTL3_10035664 Myotis brandtii Myotis_brandtii_L3MBTL3_10035664 N
Pvit_01718 Pogona vitticeps Pvit_01718 N