PK13838.1 (Cannabis sativa)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 PK13838.1 T334930_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
CRC
M07266_2.00 		Arabidopsis thaliana
TWATCATW
WATGATWA		 Dap-seq
OMalley et al.(2016)
CRC_col_a 		0.712 0.909
CRC
M07267_2.00 		Arabidopsis thaliana
GGTTAGTGTTTTGGAGTCGAATATGACTTG
CAAGTCATATTCGACTCCAAAACACTAACC		 Dap-seq
OMalley et al.(2016)
CRC_colamp_a 		0.712 0.909
YAB1
M00890_2.00 		Arabidopsis thaliana
AATAATWA
TWATTATT		 PBM
Franco-Zorrilla et al.(2014)
YAB1 		0.689 0.727
YAB5
M02486_2.00 		Arabidopsis thaliana
NNNNHRN
NYDNNNN		 PBM
Weirauch et al.(2014)
pTH7575 		0.659 0.682
YAB5
M00889_2.00 		Arabidopsis thaliana
NATRATTADNNN
NNNHTAATYATN		 PBM
Franco-Zorrilla et al.(2014)
YAB5 		0.659 0.682
INO
M02485_2.00 		Arabidopsis thaliana
NHNNNYRNNN
NNNYRNNNDN		 PBM
Weirauch et al.(2014)
pTH7516 		0.589 0.614
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PK13838.1 Sox 137 180

Links

Other Sox family TFs
Other Cannabis sativa TFs

518 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AARA005669 Anopheles arabiensis AARA005669 I 0.000
Alligator_sinensis_CCG001127.1 Alligator sinensis Alligator_sinensis_CCG001127.1 I 0.000
Alligator_sinensis_CCG005858.1 Alligator sinensis Alligator_sinensis_CCG005858.1 I 0.000
AMAM002408 Anopheles maculatus AMAM002408 I 0.000
AMAM023294 Anopheles maculatus AMAM023294 I 0.000
AMIN011055 Anopheles minimus AMIN011055 I 0.000
ANCCAN_17433 Ancylostoma caninum ANCCAN_17433 I 0.000
ANCCEY_02814 Ancylostoma ceylanicum ANCCEY_02814 I 0.000
ANCCEY_14629 Ancylostoma ceylanicum ANCCEY_14629 I 0.000
ANCDUO_03053 Ancylostoma duodenale ANCDUO_03053 I 0.000
ANCDUO_20982 Ancylostoma duodenale ANCDUO_20982 I 0.000
ANCDUO_25190 Ancylostoma duodenale ANCDUO_25190 I 0.000
ASIM_0000264801 Anisakis simplex ASIM_0000264801 I 0.000
ASIM_0001461601 Anisakis simplex ASIM_0001461601 I 0.000
BGIBMGA001714 Bombyx mori BGIBMGA001714 I 0.000
BGIBMGA003939 Bombyx mori BGIBMGA003939 I 0.000
BGLB012440 Biomphalaria glabrata BGLB012440 I 0.000
Bm5683 Brugia malayi Bm5683 I 0.000
BTMF_0000163201 Brugia timori BTMF_0000163201 I 0.000
CGI_10000136 Crassostrea gigas CGI_10000136 I 0.000
CGI_10011697 Crassostrea gigas CGI_10011697 I 0.000
CGI_10011699 Crassostrea gigas CGI_10011699 I 0.000
CGOC_0000212501 Cylicostephanus goldi CGOC_0000212501 I 0.000
CGOC_0000700501 Cylicostephanus goldi CGOC_0000700501 I 0.000
DICVIV_06455 Dictyocaulus viviparus DICVIV_06455 I 0.000
DICVIV_12912 Dictyocaulus viviparus DICVIV_12912 I 0.000
DILT_0000398501 Diphyllobothrium latum DILT_0000398501 I 0.000
ECPE_0000832401 Echinostoma caproni ECPE_0000832401 I 0.000
ELF1 Callithrix jacchus ENSCJAG00000017782 I 0.000
ELF1 Homo sapiens ENSG00000120690 D 0.000
ELF1 Procavia capensis ENSPCAG00000013981 I 0.000
ELF2 Sus scrofa ENSSSCG00000029920 I 0.000
ELF2 Vicugna pacos ENSVPAG00000003668 I 0.000
Elf4 Dipodomys ordii ENSDORG00000014956 I 0.000
ENSCHOG00000011634 Choloepus hoffmanni ENSCHOG00000011634 I 0.000
ENSDNOG00000034553 Dasypus novemcinctus ENSDNOG00000034553 I 0.000
ENSDORG00000015174 Dipodomys ordii ENSDORG00000015174 I 0.000
ENSGGOG00000022492 Gorilla gorilla ENSGGOG00000022492 I 0.000
ENSGMOG00000005395 Gadus morhua ENSGMOG00000005395 I 0.000
ENSLACG00000006078 Latimeria chalumnae ENSLACG00000006078 I 0.000
ENSMEUG00000006389 Macropus eugenii ENSMEUG00000006389 I 0.000
ENSOCUG00000021953 Oryctolagus cuniculus ENSOCUG00000021953 I 0.000
ENSPFOG00000008185 Poecilia formosa ENSPFOG00000008185 I 0.000
ENSPSIG00000014193 Pelodiscus sinensis ENSPSIG00000014193 I 0.000
ENSSTOG00000010509 Ictidomys tridecemlineatus ENSSTOG00000010509 I 0.000
ENSTBEG00000001919 Tupaia belangeri ENSTBEG00000001919 I 0.000
ENSTBEG00000008569 Tupaia belangeri ENSTBEG00000008569 I 0.000
ENSTGUG00000006059 Taeniopygia guttata ENSTGUG00000006059 I 0.000
ENSTNIG00000006987 Tetraodon nigroviridis ENSTNIG00000006987 I 0.000
ENSTRUG00000004604 Takifugu rubripes ENSTRUG00000004604 I 0.000
ENSTRUG00000006311 Takifugu rubripes ENSTRUG00000006311 I 0.000
ENSTRUG00000007244 Takifugu rubripes ENSTRUG00000007244 I 0.000
ENSVPAG00000006558 Vicugna pacos ENSVPAG00000006558 I 0.000
ENSXMAG00000018944 Xiphophorus maculatus ENSXMAG00000018944 I 0.000
ERF Callithrix jacchus ENSCJAG00000012822 I 0.000
ERF Homo sapiens ENSG00000105722 D 0.000
ETS2 Erinaceus europaeus ENSEEUG00000015949 I 0.000
ETS2 Vicugna pacos ENSVPAG00000002062 I 0.000
etv1 Gasterosteus aculeatus ENSGACG00000012802 I 0.000
ETV5 Erinaceus europaeus ENSEEUG00000003754 I 0.000
ETV5 Procavia capensis ENSPCAG00000011636 I 0.000
ETV5 Vicugna pacos ENSVPAG00000012018 I 0.000
ETV6 Tupaia belangeri ENSTBEG00000004004 I 0.000
ETV6 Homo sapiens ENSG00000139083 D 0.000
ETV7 Tupaia belangeri ENSTBEG00000000299 I 0.000
Fev Mus musculus ENSMUSG00000055197 D 0.000
GABPA Tupaia belangeri ENSTBEG00000002362 I 0.000
Hba_08310 Heterorhabditis bacteriophora Hba_08310 I 0.000
KGM_04984 Danaus plexippus KGM_04984 I 0.000
L596_g12359 Steinernema carpocapsae L596_g12359 I 0.000
L596_g92 Steinernema carpocapsae L596_g92 I 0.000
L889_g29916 Steinernema feltiae L889_g29916 I 0.000
L898_g6107 Steinernema monticolum L898_g6107 I 0.000
LOAG_09309 Loa loa LOAG_09309 I 0.000
ML46087a Mnemiopsis leidyi ML46087a I 0.000
NEMVEDRAFT_v1g201692 Nematostella vectensis NEMVEDRAFT_v1g201692 I 0.000
OESDEN_01353 Oesophagostomum dentatum OESDEN_01353 I 0.000
OESDEN_16524 Oesophagostomum dentatum OESDEN_16524 I 0.000
PPAI005463 Phlebotomus papatasi PPAI005463 I 0.000
PXEA_0003657701 Protopolystoma xenopodis PXEA_0003657701 I 0.000
SCUD_0001589201 Schistosoma curassoni SCUD_0001589201 I 0.000
SCUD_0001741701 Schistosoma curassoni SCUD_0001741701 I 0.000
SINV18588 Solenopsis invicta SINV18588 I 0.000
SMU15031575 Schmidtea mediterranea SMU15031575 I 0.000
SMUV_0000898501 Syphacia muris SMUV_0000898501 I 0.000
SPDEF Tupaia belangeri ENSTBEG00000015013 N 0.000
SPER_0001543201 Spirometra erinaceieuropaei SPER_0001543201 I 0.000
SPER_0001929301 Spirometra erinaceieuropaei SPER_0001929301 I 0.000
SPER_0002229601 Spirometra erinaceieuropaei SPER_0002229601 I 0.000
SPER_0002289501 Spirometra erinaceieuropaei SPER_0002289501 I 0.000
SPER_0002333601 Spirometra erinaceieuropaei SPER_0002333601 I 0.000
SPER_0002447201 Spirometra erinaceieuropaei SPER_0002447201 I 0.000
SROB_0001733701 Schistosoma rodhaini SROB_0001733701 I 0.000
TCLT_0000333001 Thelazia callipaeda TCLT_0000333001 I 0.000
TCNE_0001894301 Toxocara canis TCNE_0001894301 I 0.000
TELCIR_12432 Teladorsagia circumcincta TELCIR_12432 I 0.000
TELCIR_20449 Teladorsagia circumcincta TELCIR_20449 I 0.000
TELCIR_21777 Teladorsagia circumcincta TELCIR_21777 I 0.000
YQE_05461 Dendroctonus ponderosae YQE_05461 I 0.000