D918_06270 (Trichuris suis)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 D918_06270 T336191_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Cic
M00195_2.00 		Mus musculus
NNTGCTGABN
NVTCAGCANN		 PBM
Badis et al.(2009)
Cic_3454 		0.722 0.884
gei-3
M00711_2.00 		Caenorhabditis elegans
NWNWMWDN
NHWKWNWN		 PBM
Narasimhan et al.(2015)
pTH10038 		0.690 0.826
cic
M06452_2.00 		Drosophila melanogaster
YYCATTSA
TSAATGRR		 B1H
Zhu et al.(2011)
cic_SANGER_5_FBgn0028386 		0.680 0.797
BBX
M05763_2.00 		Homo sapiens
TGAWCDNYGWTCA
TGAWCRNHGWTCA		 SELEX
Yin et al.(2017)
BBX_eDBD_HT-SELEX 		0.462 0.522
BBX
M05764_2.00 		Homo sapiens
TGAACDNYGTTCA
TGAACRNHGTTCA		 SELEX
Yin et al.(2017)
BBX_eDBD_Methyl-HT-SELEX 		0.462 0.522
ROX1
M00070_2.00 		Saccharomyces cerevisiae
NRAACAATWNN
NNWATTGTTYN		 PBM
Badis et al.(2008)
ROX1_2099 		0.440 0.362
ROX1
M07498_2.00 		Saccharomyces cerevisiae
YYHATTGTTYTS
SARAACAATDRR		 PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0371.1 		0.440 0.362
ROX1
M08607_2.00 		Saccharomyces cerevisiae
BYATTGTN
NACAATRV		 Misc
DeBoer et al.(2011)
YPR065W_1396 		0.440 0.362
ROX1
M11346_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$ROX1_Q6_01 		0.440 0.362
ROX1
M11347_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$ROX1_Q6 		0.440 0.362
bbx
M03975_2.00 		Drosophila melanogaster
NAACAATDNCATTGTTN
NAACAATGNHATTGTTN		 SELEX
Nitta et al.(2015)
bbx_1 		0.440 0.536
Bbx
M00196_2.00 		Mus musculus
TTCATTGA
TCAATGAA		 PBM
Badis et al.(2009)
Bbx_3753 		0.428 0.507
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
D918_06270 Sox 689 757

Links

Other Sox family TFs
Other Trichuris suis TFs

474 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AALB004176 Anopheles albimanus AALB004176 I 0.000
Aan_R013506 Calypte anna Aan_R013506 I 0.000
AARA002478 Anopheles arabiensis AARA002478 I 0.000
AARA003085 Anopheles arabiensis AARA003085 I 0.000
AARA004375 Anopheles arabiensis AARA004375 I 0.000
AATE010168 Anopheles atroparvus AATE010168 I 0.000
AATE013099 Anopheles atroparvus AATE013099 I 0.000
ACAC_0001012701 Angiostrongylus cantonensis ACAC_0001012701 I 0.000
ACEP27603 Atta cephalotes ACEP27603 I 0.000
ACHR008110 Anopheles christyi ACHR008110 I 0.000
ACOC_0000069301 Angiostrongylus costaricensis ACOC_0000069301 I 0.000
ACOM035376 Anopheles coluzzii ACOM035376 I 0.000
ACUA004412 Anopheles culicifacies ACUA004412 I 0.000
ACUA020281 Anopheles culicifacies ACUA020281 I 0.000
ACUA022820 Anopheles culicifacies ACUA022820 I 0.000
ACYPI081976 Acyrthosiphon pisum ACYPI081976 I 0.000
ACYPI29702 Acyrthosiphon pisum ACYPI29702 I 0.000
ADIR002748 Anopheles dirus ADIR002748 I 0.000
ADIR003868 Anopheles dirus ADIR003868 I 0.000
AEPI002460 Anopheles epiroticus AEPI002460 I 0.000
AEPI006030 Anopheles epiroticus AEPI006030 I 0.000
AFAF015671 Anopheles farauti AFAF015671 I 0.000
AFUN009611 Anopheles funestus AFUN009611 I 0.000
AFUN009620 Anopheles funestus AFUN009620 I 0.000
Alligator_sinensis_CCG000828.1 Alligator sinensis Alligator_sinensis_CCG000828.1 I 0.000
Alligator_sinensis_CCG005784.1 Alligator sinensis Alligator_sinensis_CCG005784.1 I 0.000
ALUE_0002241901 Ascaris lumbricoides ALUE_0002241901 I 0.000
AMAG_05753 Allomyces macrogynus AMAG_05753 N 0.000
AMEC000122 Anopheles melas AMEC000122 I 0.000
AMEC005174 Anopheles melas AMEC005174 I 0.000
AMEC010052 Anopheles melas AMEC010052 I 0.000
AMEC010863 Anopheles melas AMEC010863 I 0.000
AMEC014658 Anopheles melas AMEC014658 I 0.000
AMEM001610 Anopheles merus AMEM001610 I 0.000
AMIN002500 Anopheles minimus AMIN002500 I 0.000
AMIN007578 Anopheles minimus AMIN007578 I 0.000
AMIN008967 Anopheles minimus AMIN008967 I 0.000
AMIN010197 Anopheles minimus AMIN010197 I 0.000
ANCCAN_14904 Ancylostoma caninum ANCCAN_14904 I 0.000
ANCCAN_20314 Ancylostoma caninum ANCCAN_20314 I 0.000
ANCCAN_27793 Ancylostoma caninum ANCCAN_27793 N 0.000
ANCDUO_08440 Ancylostoma duodenale ANCDUO_08440 N 0.000
AQUA003376 Anopheles quadriannulatus AQUA003376 I 0.000
AQUA007758 Anopheles quadriannulatus AQUA007758 I 0.000
ASIS001276 Anopheles sinensis ASIS001276 I 0.000
ASTEI06440 Anopheles stephensi ASTEI06440 I 0.000
ASTEI07263 Anopheles stephensi ASTEI07263 I 0.000
ASTEI10284 Anopheles stephensi ASTEI10284 I 0.000
A_02749 Schistosoma haematobium A_02749 I 0.000
BGIBMGA000211 Bombyx mori BGIBMGA000211 I 0.000
BGIBMGA001200 Bombyx mori BGIBMGA001200 I 0.000
BGIBMGA002125 Bombyx mori BGIBMGA002125 I 0.000
BGIBMGA008566 Bombyx mori BGIBMGA008566 I 0.000
BGIBMGA013947 Bombyx mori BGIBMGA013947 I 0.000
BTMF_0001647601 Brugia timori BTMF_0001647601 I 0.000
BXY_1244000 Bursaphelenchus xylophilus BXY_1244000 N 0.000
Cflo_03636--XP_001120088.1_APIME Camponotus floridanus Cflo_03636--XP_001120088.1_APIME I 0.000
CG5369 Drosophila melanogaster FBgn0085396 D 0.000
CGOC_0000177201 Cylicostephanus goldi CGOC_0000177201 I 0.000
CLEC005383 Cimex lectularius CLEC005383 I 0.000
Cmyd_10006711 Chelonia mydas Cmyd_10006711 I 0.000
Cmyd_10007593 Chelonia mydas Cmyd_10007593 I 0.000
CPIJ015363 Culex quinquefasciatus CPIJ015363 I 0.000
CpipJ_CPIJ015363 Culex pipiens CpipJ_CPIJ015363 I 0.000
D915_09818 Fasciola hepatica D915_09818 I 0.000
D917_02945 Trichinella nativa D917_02945 I 0.000
D917_03249 Trichinella nativa D917_03249 I 0.000
D917_09337 Trichinella nativa D917_09337 I 0.000
D918_04147 Trichuris suis D918_04147 I 0.000
DICVIV_11092 Dictyocaulus viviparus DICVIV_11092 I 0.000
DILT_0000027301 Diphyllobothrium latum DILT_0000027301 I 0.000
DILT_0000495501 Diphyllobothrium latum DILT_0000495501 I 0.000
DME_0000670301 Dracunculus medinensis DME_0000670301 I 0.000
EEL_0000229301 Elaeophora elaphi EEL_0000229301 I 0.000
EFV55957 Trichinella spiralis EFV55957 I 0.000
ENSAMEG00000015251 Ailuropoda melanoleuca ENSAMEG00000015251 I 0.000
ENSBTAP00000048189-D1 Bos grunniens ENSBTAP00000048189-D1 I 0.000
ENSCJAG00000015773 Callithrix jacchus ENSCJAG00000015773 I 0.000
ENSFALG00000010008 Ficedula albicollis ENSFALG00000010008 I 0.000
ENSFALG00000013932 Ficedula albicollis ENSFALG00000013932 I 0.000
ENSGACG00000014079 Gasterosteus aculeatus ENSGACG00000014079 I 0.000
ENSGMOG00000004901 Gadus morhua ENSGMOG00000004901 I 0.000
ENSMEUG00000013672 Macropus eugenii ENSMEUG00000013672 I 0.000
ENSMICG00000011284 Microcebus murinus ENSMICG00000011284 I 0.000
ENSNLEG00000013445 Nomascus leucogenys ENSNLEG00000013445 I 0.000
ENSOANG00000031800 Ornithorhynchus anatinus ENSOANG00000031800 I 0.000
ENSOARG00000017074 Ovis aries ENSOARG00000017074 I 0.000
ENSOCUG00000029553 Oryctolagus cuniculus ENSOCUG00000029553 I 0.000
ENSPSIG00000015830 Pelodiscus sinensis ENSPSIG00000015830 I 0.000
ENSSSCG00000022388 Sus scrofa ENSSSCG00000022388 I 0.000
ENSSSCG00000024056 Sus scrofa ENSSSCG00000024056 I 0.000
ENSTGUG00000017371 Taeniopygia guttata ENSTGUG00000017371 I 0.000
ENSTNIG00000005045 Tetraodon nigroviridis ENSTNIG00000005045 I 0.000
ENSTNIG00000014971 Tetraodon nigroviridis ENSTNIG00000014971 I 0.000
EVEC_0000184101 Enterobius vermicularis EVEC_0000184101 I 0.000
e_gw.5.534.1 Branchiostoma floridae e_gw.5.534.1 I 0.000
e_gw.5.535.1 Branchiostoma floridae e_gw.5.535.1 I 0.000
e_gw.5.736.1 Branchiostoma floridae e_gw.5.736.1 I 0.000
GD22269 Drosophila simulans FBgn0193677 I 0.000
Gfo_R004570 Geospiza fortis Gfo_R004570 I 0.000
GJ14877 Drosophila virilis FBgn0202081 I 0.000
GL18986 Drosophila persimilis FBgn0156587 I 0.000
GM11740 Drosophila sechellia FBgn0166683 I 0.000
GPLIN_000701300 Globodera pallida GPLIN_000701300 I 0.000
GPUH_0002288101 Gongylonema pulchrum GPUH_0002288101 N 0.000
Hba_10596 Heterorhabditis bacteriophora Hba_10596 I 0.000
HHAL007594-PA Halyomorpha halys HHAL007594-PA I 0.000
HHAL008731-PA Halyomorpha halys HHAL008731-PA I 0.000
HHAL010266-PA Halyomorpha halys HHAL010266-PA I 0.000
HMEL013631 Heliconius melpomene HMEL013631 I 0.000
HPLM_0001851401 Haemonchus placei HPLM_0001851401 I 0.000
Hsal_11140--XP_001120088.1_APIME Harpegnathos saltator Hsal_11140--XP_001120088.1_APIME I 0.000
ISCW016208 Ixodes scapularis ISCW016208 I 0.000
KGM_07482 Danaus plexippus KGM_07482 I 0.000
L798_03520 Zootermopsis nevadensis L798_03520 I 0.000
L893_g32186 Steinernema glaseri L893_g32186 N 0.000
LCUP003716 Lucilia cuprina LCUP003716 I 0.000
LCUP005857 Lucilia cuprina LCUP005857 I 0.000
LCUP015447 Lucilia cuprina LCUP015447 I 0.000
LDEC010779 Leptinotarsa decemlineata LDEC010779 I 0.000
lhx2.L Xenopus laevis XB-GENE-6252391 I 0.000
lhx2b Oryzias latipes ENSORLG00000016465 I 0.000
LHX3 Canis familiaris ENSCAFG00000019695 I 0.000
LHX8 Vicugna pacos ENSVPAG00000001409 I 0.000
lhx8.L Xenopus laevis XB-GENE-866406 I 0.000
LLOJ001498 Lutzomyia longipalpis LLOJ001498 I 0.000
LLOJ008114 Lutzomyia longipalpis LLOJ008114 I 0.000
LLOJ008518 Lutzomyia longipalpis LLOJ008518 I 0.000
LotgiG56601 Lottia gigantea LotgiG56601 I 0.000
M408DRAFT_217919 Serendipita vermifera M408DRAFT_217919 N 0.000
MCOS_0000529301 Mesocestoides corti MCOS_0000529301 I 0.000
MESCA002030 Megaselia scalaris MESCA002030 I 0.000
ML089413a Mnemiopsis leidyi ML089413a N 0.000
Myotis_brandtii_Otp_10035961 Myotis brandtii Myotis_brandtii_Otp_10035961 I 0.000
NBR_0001532201 Nippostrongylus brasiliensis NBR_0001532201 I 0.000
nOo.2.0.1.g10008 Onchocerca ochengi nOo.2.0.1.g10008 I 0.000
nRc.2.0.1.g08290 Romanomermis culicivorax nRc.2.0.1.g08290 I 0.000
Ocbimv22008407m.g Octopus bimaculoides Ocbimv22008407m.g I 0.000
Ocbimv22018651m.g Octopus bimaculoides Ocbimv22018651m.g I 0.000
Ocbimv22024620m.g Octopus bimaculoides Ocbimv22024620m.g I 0.000
Ocbimv22027060m.g Octopus bimaculoides Ocbimv22027060m.g I 0.000
OESDEN_23981 Oesophagostomum dentatum OESDEN_23981 I 0.000
OFLC_0000877001 Onchocerca flexuosa OFLC_0000877001 I 0.000
OFLC_0001281801 Onchocerca flexuosa OFLC_0001281801 I 0.000
Ogr07504 Ophisaurus gracilis Ogr07504 I 0.000
Ogr11012 Ophisaurus gracilis Ogr11012 I 0.000
OTP Bos taurus ENSBTAG00000009249 I 0.000
PEQ_0000251201 Parascaris equorum PEQ_0000251201 I 0.000
PEQ_0000620601 Parascaris equorum PEQ_0000620601 I 0.000
PPAI002754 Phlebotomus papatasi PPAI002754 I 0.000
PPAI010885 Phlebotomus papatasi PPAI010885 I 0.000
PXEA_0000515801 Protopolystoma xenopodis PXEA_0000515801 I 0.000
PXEA_0001033501 Protopolystoma xenopodis PXEA_0001033501 I 0.000
PXEA_0001980401 Protopolystoma xenopodis PXEA_0001980401 I 0.000
PXEA_0002116501 Protopolystoma xenopodis PXEA_0002116501 I 0.000
RPRC012663 Rhodnius prolixus RPRC012663 I 0.000
RSKR_0000575100 Rhabditophanes kr3021 RSKR_0000575100 I 0.000
Sakowv30005917m.g Saccoglossus kowalevskii Sakowv30005917m.g I 0.000
Sakowv30011703m.g Saccoglossus kowalevskii Sakowv30011703m.g I 0.000
SBAD_0000293901 Soboliphyme baturini SBAD_0000293901 I 0.000
SBAD_0000889101 Soboliphyme baturini SBAD_0000889101 I 0.000
scaffold110-EXSNAP2012.2 Pristionchus exspectatus scaffold110-EXSNAP2012.2 I 0.000
scaffold74-EXSNAP2012.8 Pristionchus exspectatus scaffold74-EXSNAP2012.8 I 0.000
SCUD_0000098201 Schistosoma curassoni SCUD_0000098201 I 0.000
SHOX Microcebus murinus ENSMICG00000014601 I 0.000
SHOX Tupaia belangeri ENSTBEG00000008957 I 0.000
shox2 Takifugu rubripes ENSTRUG00000014042 I 0.000
SINV20623 Solenopsis invicta SINV20623 I 0.000
SINV25034 Solenopsis invicta SINV25034 I 0.000
Sjc_0012410 Schistosoma japonicum Sjc_0012410 I 0.000
Sjc_0066210 Schistosoma japonicum Sjc_0066210 I 0.000
Sjc_0082880 Schistosoma japonicum Sjc_0082880 I 0.000
SMRZ_0000665001 Schistosoma margrebowiei SMRZ_0000665001 I 0.000
SMRZ_0002144101 Schistosoma margrebowiei SMRZ_0002144101 I 0.000
SPER_0000203401 Spirometra erinaceieuropaei SPER_0000203401 I 0.000
SPER_0003615501 Spirometra erinaceieuropaei SPER_0003615501 I 0.000
SPU_021491 Strongylocentrotus purpuratus SPU_021491 I 0.000
SROB_0002351101 Schistosoma rodhaini SROB_0002351101 I 0.000
SSLN_0000421001 Schistocephalus solidus SSLN_0000421001 I 0.000
SVUK_0001874801 Strongylus vulgaris SVUK_0001874801 I 0.000
SVUK_0001921301 Strongylus vulgaris SVUK_0001921301 I 0.000
SVUK_0001995201 Strongylus vulgaris SVUK_0001995201 I 0.000
Tal_R004621 Tyto alba Tal_R004621 I 0.000
TC008928 Tribolium castaneum TC008928 I 0.000
TC013331 Tribolium castaneum TC013331 I 0.000
tetur02g06020 Tetranychus urticae tetur02g06020 I 0.000
TRE_0000038601 Trichobilharzia regenti TRE_0000038601 I 0.000
TRE_0000375601 Trichobilharzia regenti TRE_0000375601 I 0.000
TRE_0001489001 Trichobilharzia regenti TRE_0001489001 I 0.000
TTAC_0001098801 Hydatigera taeniaeformis TTAC_0001098801 I 0.000
UNCX Bos taurus ENSBTAG00000030721 I 0.000
Uncx Mus musculus ENSMUSG00000029546 D 0.000
uncx.L Xenopus laevis XB-GENE-920204 I 0.000
V565_128500 Rhizoctonia solani V565_128500 I 0.000
WUBG_04568 Wuchereria bancrofti WUBG_04568 I 0.000
YQE_09084 Dendroctonus ponderosae YQE_09084 I 0.000