L898_g23157 (Steinernema monticolum)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 L898_g23157 T336579_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
L898_g23157.t1 Sox 246 316

Links

Other Sox family TFs
Other Steinernema monticolum TFs

23 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
28603.m000172 Ricinus communis 28603.m000172 N 0.000
29767.m000199 Ricinus communis 29767.m000199 N 0.000
30167.m000852 Ricinus communis 30167.m000852 N 0.000
AMTR_s00044p00233260 Amborella trichopoda AMTR_s00044p00233260 N 0.000
Aquca_027_00369 Aquilegia coerulea Aquca_027_00369 N 0.000
AS1 Arabidopsis thaliana AT2G37630 N 0.000
BGIOSGA035973 Oryza indica BGIOSGA035973 N 0.000
BGIOSGA037216 Oryza indica BGIOSGA037216 N 0.000
Bo3g031880 Brassica oleracea Bo3g031880 N 0.000
Bo4g030340 Brassica oleracea Bo4g030340 N 0.000
Bostr.23794s0314 Boechera stricta Bostr.23794s0314 N 0.000
Bra000011 Brassica rapa Bra000011 N 0.000
Bra005177 Brassica rapa Bra005177 N 0.000
BRADI4G03970 Brachypodium distachyon BRADI4G03970 N 0.000
Cagra.18121s0004 Capsella grandiflora Cagra.18121s0004 N 0.000
Carubv10023471m.g Capsella rubella Carubv10023471m.g N 0.000
cassava35798.valid.m1 Manihot esculenta cassava35798.valid.m1 N 0.000
Ca_21130 Cicer arietinum Ca_21130 N 0.000
chr3.LjT11G09.150.nc Lotus japonicus chr3.LjT11G09.150.nc N 0.000
chr3.LjT11G09.160.nc Lotus japonicus chr3.LjT11G09.160.nc N 0.000
Ciclev10011915m.g Citrus clementina Ciclev10011915m.g N 0.000
Ciclev10012089m.g Citrus clementina Ciclev10012089m.g N 0.000
Cla007228 Citrullus lanatus Cla007228 N 0.000
Cucsa.031620 Cucumis sativus Cucsa.031620 N 0.000
Eucgr.K03130 Eucalyptus grandis Eucgr.K03130 N 0.000
evm.TU.supercontig_333.1 Carica papaya evm.TU.supercontig_333.1 N 0.000
fgenesh1_pm.C_scaffold_4001520 Arabidopsis lyrata fgenesh1_pm.C_scaffold_4001520 N 0.000
gene08535-v1.0-hybrid Fragaria vesca gene08535-v1.0-hybrid N 0.000
gene10329-v1.0-hybrid Fragaria vesca gene10329-v1.0-hybrid N 0.000
gene18421-v1.0-hybrid Fragaria vesca gene18421-v1.0-hybrid N 0.000
GLYMA03G19030 Glycine max GLYMA03G19030 N 0.000
GLYMA07G15850 Glycine max GLYMA07G15850 N 0.000
GLYMA18G26600 Glycine max GLYMA18G26600 N 0.000
GLYMA18G39771 Glycine max GLYMA18G39771 N 0.000
Gorai.012G104100 Gossypium raimondii Gorai.012G104100 N 0.000
GRMZM2G403620 Zea mays GRMZM2G403620 N 0.000
GSMUA_Achr5G29070_001 Musa acuminata GSMUA_Achr5G29070_001 N 0.000
GSMUA_Achr7G10550_001 Musa acuminata GSMUA_Achr7G10550_001 N 0.000
GSMUA_Achr9G03320_001 Musa acuminata GSMUA_Achr9G03320_001 N 0.000
GSMUA_Achr9G19380_001 Musa acuminata GSMUA_Achr9G19380_001 N 0.000
GSMUA_Achr9G28330_001 Musa acuminata GSMUA_Achr9G28330_001 N 0.000
LPERR12G13690 Leersia perrieri LPERR12G13690 N 0.000
Lus10024392.g Linum usitatissimum Lus10024392.g N 0.000
Lus10025355.g Linum usitatissimum Lus10025355.g N 0.000
MDP0000252887 Malus domestica MDP0000252887 N 0.000
MDP0000282792 Malus domestica MDP0000282792 N 0.000
MDP0000708334 Malus domestica MDP0000708334 N 0.000
mgf026281m Mimulus guttatus mgf026281m N 0.000
mgf026496m Mimulus guttatus mgf026496m N 0.000
MTR_7g061550 Medicago truncatula MTR_7g061550 N 0.000
OB12G23330 Oryza brachyantha OB12G23330 N 0.000
OBART12G16450 Oryza barthii OBART12G16450 N 0.000
OGLUM12G18010 Oryza glumaepatula OGLUM12G18010 N 0.000
OMERI08G15890 Oryza meridionalis OMERI08G15890 N 0.000
ONIVA02G22170 Oryza nivara ONIVA02G22170 N 0.000
OPUNC12G14950 Oryza punctata OPUNC12G14950 N 0.000
orange1.1g018768m.g Citrus sinensis orange1.1g018768m.g N 0.000
ORUFI12G18280 Oryza rufipogon ORUFI12G18280 N 0.000
OS12G0572000 Oryza sativa OS12G0572000 N 0.000
Pavir.Cb00486 Panicum virgatum Pavir.Cb00486 N 0.000
PGSC0003DMG400008834 Solanum tuberosum PGSC0003DMG400008834 N 0.000
PK14097.1 Cannabis sativa PK14097.1 N 0.000
Pm002699 Prunus mume Pm002699 N 0.000
POPTR_0004s10250 Populus trichocarpa POPTR_0004s10250 N 0.000
POPTR_0006s08610 Populus trichocarpa POPTR_0006s08610 N 0.000
POPTR_0017s13950 Populus trichocarpa POPTR_0017s13950 N 0.000
PRUPE_ppa007753mg Prunus persica PRUPE_ppa007753mg N 0.000
SapurV1A.0001s1780 Salix purpurea SapurV1A.0001s1780 N 0.000
SapurV1A.0101s0440 Salix purpurea SapurV1A.0101s0440 N 0.000
Sb08g018840 Sorghum bicolor Sb08g018840 N 0.000
scaffold_402408.1 Arabidopsis lyrata scaffold_402408.1 N 0.000
SELMODRAFT_140962 Selaginella moellendorffii SELMODRAFT_140962 N 0.000
SELMODRAFT_270481 Selaginella moellendorffii SELMODRAFT_270481 N 0.000
Solyc09g010840.1 Solanum lycopersicum Solyc09g010840.1 N 0.000
TCM_019507 Theobroma cacao TCM_019507 N 0.000
TCM_021932 Theobroma cacao TCM_021932 N 0.000
Thhalv10016830m.g Eutrema salsugineum Thhalv10016830m.g N 0.000
Traes_5BS_E635B0A281 Triticum aestivum Traes_5BS_E635B0A281 N 0.000
Traes_5DS_8F3BD4450 Triticum aestivum Traes_5DS_8F3BD4450 N 0.000
TRIUR3_13997 Triticum urartu TRIUR3_13997 N 0.000
VIT_08s0007g00410 Vitis vinifera VIT_08s0007g00410 N 0.000
VIT_14s0083g00120 Vitis vinifera VIT_14s0083g00120 N 0.000