CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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MhA1_Contig134.frz3.gene34
(
Meloidogyne hapla
)
Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00505 (HMG_box)
IPR000910
MhA1_Contig134.frz3.gene34
T336619_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
MhA1_Contig134.frz3.gene34
Sox
937
994
DKATKAAVLYSNIQHPNLKEKFPLWSDRVRQINKIWRELNPEKRQEFVELARKNRLNC
Links
Other
Sox
family TFs
Other
Meloidogyne hapla
TFs
5 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
augustus_masked-nMf.1.1.scaf11440-processed-gene-0.0
Meloidogyne floridensis
augustus_masked-nMf.1.1.scaf11440-processed-gene-0.0
N
0.741
L889_g16824
Steinernema feltiae
L889_g16824
N
0.417
L893_g8502
Steinernema glaseri
L893_g8502
N
0.418
Minc00429
Meloidogyne incognita
Minc00429
N
0.741
Minc11430
Meloidogyne incognita
Minc11430
N
0.741