e_gw.418.20.1 (Branchiostoma floridae)
T-box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00907 (T-box) IPR001699 e_gw.418.20.1 T341166_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TBX18
M05797_2.00 		Homo sapiens
DDAGGTGTGARV
BYTCACACCTHH		 SELEX
Yin et al.(2017)
TBX18_eDBD_HT-SELEX 		0.827 0.775
TBX18
M11380_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TBX18_01 		0.827 0.775
TBX18
M05798_2.00 		Homo sapiens
NDAGGYGTGAAN
NTTCACRCCTHN		 SELEX
Yin et al.(2017)
TBX18_eDBD_Methyl-HT-SELEX 		0.827 0.775
TBX15
M03554_2.00 		Homo sapiens
AGGTGTGAAATTCACACCT
AGGTGTGAATTTCACACCT		 SELEX
Jolma et al.(2013)
TBX15_1 		0.826 0.797
TBX15
M03555_2.00 		Homo sapiens
AGGTGTGA
TCACACCT		 SELEX
Jolma et al.(2013)
TBX15_2 		0.826 0.797
TBX15
M05795_2.00 		Homo sapiens
NRSGTGTBAN
NTVACACSYN		 SELEX
Yin et al.(2017)
TBX15_eDBD_HT-SELEX 		0.826 0.797
TBX15
M11378_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TBX15_01 		0.826 0.797
TBX15
M11379_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TBX15_02 		0.826 0.797
TBX15
M05796_2.00 		Homo sapiens
NDSGYGTBAN
NTVACRCSHN		 SELEX
Yin et al.(2017)
TBX15_eDBD_Methyl-HT-SELEX 		0.826 0.797
TBX22
M11383_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TBX22_01 		0.803 0.692
TBX20
M03565_2.00 		Homo sapiens
AGGTGTKARVGYGTGA
TCACRCBYTMACACCT		 SELEX
Jolma et al.(2013)
TBX20_1 		0.782 0.676
TBX20
M03566_2.00 		Homo sapiens
AGGTGTGAAWDTSACACBT
AVGTGTSAHWTTCACACCT		 SELEX
Jolma et al.(2013)
TBX20_2 		0.782 0.676
TBX20
M03567_2.00 		Homo sapiens
NNNDAGGTGTGAAND
HNTTCACACCTHNNN		 SELEX
Jolma et al.(2013)
TBX20_3 		0.782 0.676
TBX20
M03568_2.00 		Homo sapiens
DAGGTGTGAWR
YWTCACACCTH		 SELEX
Jolma et al.(2013)
TBX20_4 		0.782 0.676
TBX20
M03569_2.00 		Homo sapiens
AGGTGTKANGKTGTSA
TSACAMCNTMACACCT		 SELEX
Jolma et al.(2013)
TBX20_5 		0.782 0.676
TBX20
M05813_2.00 		Homo sapiens
DAGGTGTKARSGTGTGAA
TTCACACSYTMACACCTH		 SELEX
Yin et al.(2017)
TBX20_eDBD_HT-SELEX_1 		0.782 0.676
TBX20
M05814_2.00 		Homo sapiens
NAGGTGTGAAWTTCACACCTN
NAGGTGTGAAWTTCACACCTN		 SELEX
Yin et al.(2017)
TBX20_eDBD_HT-SELEX_2 		0.782 0.676
TBX20
M05817_2.00 		Homo sapiens
DRRGTGTBADVGYGTBAN
NTVACRCBHTVACACYYH		 SELEX
Yin et al.(2017)
TBX20_FL_HT-SELEX_1 		0.782 0.676
TBX20
M05818_2.00 		Homo sapiens
WTCACACYTAGGTGTKAM
KTMACACCTARGTGTGAW		 SELEX
Yin et al.(2017)
TBX20_FL_HT-SELEX_2 		0.782 0.676
TBX20
M11385_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TBX20_05 		0.782 0.676
TBX20
M05815_2.00 		Homo sapiens
DAGGTGTKAASGYGTKAA
TTMACRCSTTMACACCTH		 SELEX
Yin et al.(2017)
TBX20_eDBD_Methyl-HT-SELEX_1 		0.782 0.676
TBX20
M05816_2.00 		Homo sapiens
DASGTGTGAWWWTCACACCTH
DAGGTGTGAWWWTCACACSTH		 SELEX
Yin et al.(2017)
TBX20_eDBD_Methyl-HT-SELEX_2 		0.782 0.676
TBX20
M05819_2.00 		Homo sapiens
DRGGYGTBARVGYGTKAN
NTMACRCBYTVACRCCYH		 SELEX
Yin et al.(2017)
TBX20_FL_Methyl-HT-SELEX_1 		0.782 0.676
TBX20
M05820_2.00 		Homo sapiens
TTMACRCCTAVGTGTGAA
TTCACACBTAGGYGTKAA		 SELEX
Yin et al.(2017)
TBX20_FL_Methyl-HT-SELEX_2 		0.782 0.676
Tbx20
M00835_2.00 		Mus musculus
NRRGTGTBAN
NTVACACYYN		 PBM
Weirauch et al.(2013)
pTH3777 		0.782 0.670
Tbx20
M09430_2.00 		Mus musculus
NDSTGNTGACAGSN
NSCTGTCANCASHN		 Misc
Kulakovskiy et al.(2013)
TBX20_MOUSE.H11MO.0.C 		0.782 0.670
Tbx20
M09650_2.00 		Mus musculus
SCTGTCADCASN
NSTGHTGACAGS		 Misc
Heinz et al.(2010)
Heart-Tbx20_GSE29636 		0.782 0.670
mid
M03994_2.00 		Drosophila melanogaster
DAGGTGTKAN
NTMACACCTH		 SELEX
Nitta et al.(2015)
mid_1 		0.758 0.593
For this family, TFs with SR scores > 0.734 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
e_gw.418.20.1 T-box 5 194

Links

Other T-box family TFs
Other Branchiostoma floridae TFs

261 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cmyd_10007016 Chelonia mydas Cmyd_10007016 I
ENSAMEG00000017605 Ailuropoda melanoleuca ENSAMEG00000017605 I
ENSCSAG00000012256 Chlorocebus sabaeus ENSCSAG00000012256 I
ENSLACG00000008349 Latimeria chalumnae ENSLACG00000008349 I
ENSMEUG00000009050 Macropus eugenii ENSMEUG00000009050 I
ENSMICG00000003274 Microcebus murinus ENSMICG00000003274 I
ENSMMUG00000022320 Macaca mulatta ENSMMUG00000022320 I
ENSMPUG00000007828 Mustela putorius furo ENSMPUG00000007828 I
ENSNLEG00000009898 Nomascus leucogenys ENSNLEG00000009898 I
ENSOARG00000003067 Ovis aries ENSOARG00000003067 I
ENSOCUG00000022425 Oryctolagus cuniculus ENSOCUG00000022425 I
ENSP00000230732 Macaca fascicularis ENSP00000230732 I
ENSP00000230732-D1 Bos grunniens ENSP00000230732-D1 I
ENSPANG00000008306 Papio anubis ENSPANG00000008306 I
ENSPFOG00000003289 Poecilia formosa ENSPFOG00000003289 I
ENSPPYG00000015910 Pongo abelii ENSPPYG00000015910 I
ENSPSIG00000016096 Pelodiscus sinensis ENSPSIG00000016096 I
ENSSHAG00000008089 Sarcophilus harrisii ENSSHAG00000008089 I
ENSSTOG00000021302 Ictidomys tridecemlineatus ENSSTOG00000021302 I
ENSXMAG00000001410 Xiphophorus maculatus ENSXMAG00000001410 I
POU4F3 Pan troglodytes ENSPTRG00000017374 I
POU4F3 Pteropus vampyrus ENSPVAG00000005224 I
Pou4f3 Rattus norvegicus ENSRNOG00000018842 I
POU4F3 Sus scrofa ENSSSCG00000014412 I
POU4F3 Tupaia belangeri ENSTBEG00000014805 I
POU4F3 Tursiops truncatus ENSTTRG00000000937 I
Pou4f3 Mus musculus ENSMUSG00000024497 D
POU4F3 Otolemur garnettii ENSOGAG00000026756 I
POU4F3 Monodelphis domestica ENSMODG00000010137 I
POU4F3 Loxodonta africana ENSLAFG00000006932 I
POU4F3 Gorilla gorilla ENSGGOG00000012435 I
POU4F3 Homo sapiens ENSG00000091010 D
POU4F3 Felis catus ENSFCAG00000030722 I
POU4F3 Echinops telfairi ENSETEG00000006520 I
POU4F3 Erinaceus europaeus ENSEEUG00000012660 I
POU4F3 Equus caballus ENSECAG00000018410 I
Pou4f3 Dipodomys ordii ENSDORG00000002965 I
POU4F3 Dasypus novemcinctus ENSDNOG00000045606 I
POU4F3 Cavia porcellus ENSCPOG00000025610 I
POU4F3 Callithrix jacchus ENSCJAG00000021307 I
POU4F3 Canis familiaris ENSCAFG00000006473 I
POU4F3 Bos taurus ENSBTAG00000018817 I