CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
SMU15026199
(
Schmidtea mediterranea
)
T-box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00907 (T-box)
IPR001699
SMU15026199
T341252_2.00
Misc (2018-Jan-19)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Tbx2
M00830_2.00
Mus musculus
NYVDCACBHN
NDVGTGHBRN
PBM
Weirauch et al.(2013)
pTH3751
0.830
0.834
TBX2
M03556_2.00
Homo sapiens
GGTGTKADDWNTVACACB
VGTGTBANWHHTMACACC
SELEX
Jolma et al.(2013)
TBX2_1
0.830
0.834
TBX2
M03557_2.00
Homo sapiens
NAGGTGTBAWN
NWTVACACCTN
SELEX
Jolma et al.(2013)
TBX2_2
0.830
0.834
TBX2
M05799_2.00
Homo sapiens
NNVRCRCNNN
NNNGYGYBNN
SELEX
Yin et al.(2017)
TBX2_eDBD_HT-SELEX
0.830
0.834
Tbx2
M08044_2.00
Mus musculus
GCHYBCTGGGADHTGTAGTYH
DRACTACADHTCCCAGVRDGC
ChIP-seq
Chen et al.(2011)
SRP001585_Tbx2
0.830
0.834
TBX2
M11381_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TBX2_Q2
0.830
0.834
TBX2
M11382_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TBX2_Q5
0.830
0.834
TBX2
M05800_2.00
Homo sapiens
NNVRCRCBNN
NNVGYGYBNN
SELEX
Yin et al.(2017)
TBX2_eDBD_Methyl-HT-SELEX
0.830
0.834
Tbx3
M00834_2.00
Mus musculus
NHNDCACNHN
NDNGTGHNDN
PBM
Weirauch et al.(2013)
pTH3998
0.828
0.818
TBX3
M05801_2.00
Homo sapiens
NDSGTGTBRN
NYVACACSHN
SELEX
Yin et al.(2017)
TBX3_eDBD_HT-SELEX
0.828
0.818
TBX3
M09426_2.00
Homo sapiens
DVDGGTGBNAR
YTNVCACCHBH
Misc
Kulakovskiy et al.(2013)
TBX3_HUMAN.H11MO.0.C
0.828
0.818
Tbx3
M09429_2.00
Mus musculus
RRGGTGBBR
YVVCACCYY
Misc
Kulakovskiy et al.(2013)
TBX3_MOUSE.H11MO.0.B
0.828
0.818
TBX3
M05802_2.00
Homo sapiens
DAGGTGTKAN
NTMACACCTH
SELEX
Yin et al.(2017)
TBX3_eDBD_Methyl-HT-SELEX
0.828
0.818
XP_008203914.1
M01029_2.00
Nasonia vitripennis
AGGTGTBA
TVACACCT
PBM
SebePedros et al.(2013)
pTH9336
0.827
0.812
TBX2
M02495_2.00
Gasterosteus aculeatus
NNVDCACNHN
NDNGTGHBNN
PBM
Weirauch et al.(2014)
pTH9182
0.815
0.823
TBX2
M02496_2.00
Takifugu rubripes
DAGGTGTBRN
NYVACACCTH
PBM
Weirauch et al.(2014)
pTH9289
0.815
0.818
estExt_fgenesh2_pg.C_1570024
M01030_2.00
Branchiostoma floridae
NHNDCACNHN
NDNGTGHNDN
PBM
SebePedros et al.(2013)
pTH9244
0.764
0.663
XP_001195863
M02498_2.00
Strongylocentrotus purpuratus
AGGTGTBA
TVACACCT
PBM
Weirauch et al.(2014)
pTH9340
0.746
0.657
Tbx5
M00833_2.00
Mus musculus
AGGTGTBA
TVACACCT
PBM
Weirauch et al.(2013)
pTH3775
0.744
0.613
TBX5
M03552_2.00
Homo sapiens
AGGTGTBA
TVACACCT
SELEX
Jolma et al.(2013)
TBX5_1
0.744
0.613
TBX5
M03553_2.00
Homo sapiens
AGGTGTKANWWNTVACACCT
AGGTGTBANWWNTMACACCT
SELEX
Jolma et al.(2013)
TBX5_2
0.744
0.613
Tbx5
M09649_2.00
Mus musculus
AGGTGHBA
TVDCACCT
Misc
Heinz et al.(2010)
HL1-Tbx5.biotin_GSE21529
0.744
0.613
TBX5
M11374_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TBX5_01
0.744
0.613
TBX5
M11375_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TBX5_02
0.744
0.613
Tbx5
M11387_2.00
Mus musculus
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TBX5_05
0.744
0.613
TBX5
M11376_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TBX5_Q2
0.744
0.613
TBX5
M11377_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TBX5_Q5
0.744
0.613
Tbx4
M00831_2.00
Mus musculus
AGGTGTBA
TVACACCT
PBM
Weirauch et al.(2013)
pTH3973
0.740
0.608
TBX4
M03558_2.00
Homo sapiens
AGGTGTBA
TVACACCT
SELEX
Jolma et al.(2013)
TBX4_1
0.740
0.608
TBX4
M03559_2.00
Homo sapiens
AGGTGTBANWWNTVACACBT
AVGTGTBANWWNTVACACCT
SELEX
Jolma et al.(2013)
TBX4_2
0.740
0.608
For this family, TFs with SR scores >
0.734
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
SMU15026199
T-box
91
271
VELIDRDLWEQFHAYGTEMVITKSGRRMFPPYKVQVSGLDKRAKYIMLMDVVAVDDCRYKFHNNQWMVAGKADPEMPKRMYIHPDSPTTGEQWMQKIISFHKLKLTNNISDKHGFTILNSMHKYQPRFHLVRANDIMRLPYSTFRSYVFKETQFIGVTAYQNEKITQLKIDHNPFAKGFRD
Links
Other
T-box
family TFs
Other
Schmidtea mediterranea
TFs
301 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy