DAPPUDRAFT_194512 (Daphnia pulex)
TBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00352 (TBP) IPR000814 DAPPUDRAFT_194512 T342237_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Tbp
M00216_2.00 		Mus musculus
NWWWWAW
WTWWWWN		 PBM
Badis et al.(2009)
Tbp_pr781 		0.940 0.940
TBP
M08231_2.00 		Homo sapiens
YATTTGCATD
HATGCAAATR		 ChIP-seq
Contrino et al.(2012)
Mv129 		0.940 0.940
TBP
M09432_2.00 		Homo sapiens
MTATAWAWRS
SYWTWTATAK		 Misc
Kulakovskiy et al.(2013)
TBP_HUMAN.H11MO.0.A 		0.940 0.940
Tbp
M09433_2.00 		Mus musculus
VTATAAAARS
SYTTTTATAB		 Misc
Kulakovskiy et al.(2013)
TBP_MOUSE.H11MO.0.A 		0.940 0.940
TBP
M11388_2.00 		Homo sapiens
VTATAWAWRVVNNNN
NNNNBBYWTWTATAB		 Transfac
Matys et al.(2006)
V$TATA_01 		0.940 0.940
TBP
M11389_2.00 		Homo sapiens
NCYWTAAAAD
HTTTTAWRGN		 Transfac
Matys et al.(2006)
V$TATA_C 		0.940 0.940
TBP
M11390_2.00 		Homo sapiens
KATAAATW
WATTTATM		 Transfac
Matys et al.(2006)
V$TBP_01 		0.940 0.940
TBP
M11391_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TBP_Q6_01 		0.940 0.940
TBP
M11392_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TBP_Q6 		0.940 0.940
TBP
M11491_2.00 		Homo sapiens
VTATAWAWRVVNNNN
NNNNBBYWTWTATAB		 Unknown
Mathelier et al.(2014)
MA0108.2 		0.940 0.940
SPT15
M01567_2.00 		Saccharomyces cerevisiae
NNDWDAW
WTHWHNN		 PBM
Zhu et al.(2009)
Spt15 		0.820 0.820
SPT15
M08609_2.00 		Saccharomyces cerevisiae
NNBBHWTATATATWNCNNDNB
VNHNNGNWATATATAWDVVNN		 Misc
DeBoer et al.(2011)
YER148W_798 		0.820 0.820
SPT15
M11393_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$TBP_Q6 		0.820 0.820
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EFX84545 TBP 136 218
EFX84545 TBP 226 309

Links

Other TBP family TFs
Other Daphnia pulex TFs

802 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
estExt_fgenesh1_kg.C_170712 Phytophthora capsici estExt_fgenesh1_kg.C_170712 N
F443_04726 Phytophthora parasitica F443_04726 N
F443_04727 Phytophthora parasitica F443_04727 N
fgenesh-par_contig_48-abinit-gene-0.93 Pythium arrhenomanes fgenesh-par_contig_48-abinit-gene-0.93 N
fgenesh_scip_prom.28083.7384 Phytophthora lateralis fgenesh_scip_prom.28083.7384 N
fgenesh_scip_prom.46568.4988 Phytophthora kernoviae fgenesh_scip_prom.46568.4988 N
maker-pag1_scaffold_223-snap-gene-0.15 Pythium aphanidermatum maker-pag1_scaffold_223-snap-gene-0.15 N
maker-pag1_scaffold_73-snap-gene-0.36 Pythium aphanidermatum maker-pag1_scaffold_73-snap-gene-0.36 N
maker-pir_contig_839-snap-gene-0.7 Pythium irregulare maker-pir_contig_839-snap-gene-0.7 N
maker-pir_contig_839-snap-gene-0.8 Pythium irregulare maker-pir_contig_839-snap-gene-0.8 N
maker-pve_contig_301-fgenesh-gene-0.2 Pythium vexans maker-pve_contig_301-fgenesh-gene-0.2 N
maker-pve_contig_301-fgenesh-gene-0.3 Pythium vexans maker-pve_contig_301-fgenesh-gene-0.3 N
Phyra85853 Phytophthora ramorum Phyra85853 N
Physo128589 Phytophthora sojae Physo128589 N
Physo128590 Phytophthora sojae Physo128590 N
PITG_17391 Phytophthora infestans PITG_17391 N
PYU1_G006823 Pythium ultimum PYU1_G006823 I
PYU1_G006824 Pythium ultimum PYU1_G006824 N
SPRG_14746 Saprolegnia parasitica SPRG_14746 N
SPRG_14762 Saprolegnia parasitica SPRG_14762 N