nOo.2.0.1.g04267 (Onchocerca ochengi)
TBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00352 (TBP) IPR000814 nOo.2.0.1.g04267 T343564_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Tbp
M00216_2.00 		Mus musculus
NWWWWAW
WTWWWWN		 PBM
Badis et al.(2009)
Tbp_pr781 		0.844 0.844
TBP
M08231_2.00 		Homo sapiens
YATTTGCATD
HATGCAAATR		 ChIP-seq
Contrino et al.(2012)
Mv129 		0.844 0.844
TBP
M09432_2.00 		Homo sapiens
MTATAWAWRS
SYWTWTATAK		 Misc
Kulakovskiy et al.(2013)
TBP_HUMAN.H11MO.0.A 		0.844 0.844
Tbp
M09433_2.00 		Mus musculus
VTATAAAARS
SYTTTTATAB		 Misc
Kulakovskiy et al.(2013)
TBP_MOUSE.H11MO.0.A 		0.844 0.844
TBP
M11388_2.00 		Homo sapiens
VTATAWAWRVVNNNN
NNNNBBYWTWTATAB		 Transfac
Matys et al.(2006)
V$TATA_01 		0.844 0.844
TBP
M11389_2.00 		Homo sapiens
NCYWTAAAAD
HTTTTAWRGN		 Transfac
Matys et al.(2006)
V$TATA_C 		0.844 0.844
TBP
M11390_2.00 		Homo sapiens
KATAAATW
WATTTATM		 Transfac
Matys et al.(2006)
V$TBP_01 		0.844 0.844
TBP
M11391_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TBP_Q6_01 		0.844 0.844
TBP
M11392_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TBP_Q6 		0.844 0.844
TBP
M11491_2.00 		Homo sapiens
VTATAWAWRVVNNNN
NNNNBBYWTWTATAB		 Unknown
Mathelier et al.(2014)
MA0108.2 		0.844 0.844
SPT15
M01567_2.00 		Saccharomyces cerevisiae
NNDWDAW
WTHWHNN		 PBM
Zhu et al.(2009)
Spt15 		0.743 0.743
SPT15
M08609_2.00 		Saccharomyces cerevisiae
NNBBHWTATATATWNCNNDNB
VNHNNGNWATATATAWDVVNN		 Misc
DeBoer et al.(2011)
YER148W_798 		0.743 0.743
SPT15
M11393_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$TBP_Q6 		0.743 0.743
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
nOo.2.0.1.t04267-RA TBP 194 276
nOo.2.0.1.t04267-RA TBP 284 367

Links

Other TBP family TFs
Other Onchocerca ochengi TFs

733 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BN946_scf184844.g88 Trametes cinnabarina BN946_scf184844.g88 N
CC1G_07693 Coprinopsis cinerea CC1G_07693 N
CERSUDRAFT_88317 Ceriporiopsis subvermispora CERSUDRAFT_88317 N
CY34DRAFT_76552 Suillus luteus CY34DRAFT_76552 N
DICSQDRAFT_174574 Dichomitus squalens DICSQDRAFT_174574 N
estExt_fgenesh3_kg.C_120059 Heterobasidion annosum estExt_fgenesh3_kg.C_120059 N
fgenesh1_pg.C_scaffold_7000466 Phanerochaete chrysosporium fgenesh1_pg.C_scaffold_7000466 N
FIBRA_08064 Fibroporia radiculosa FIBRA_08064 N
FOMPIDRAFT_152036 Fomitopsis pinicola FOMPIDRAFT_152036 N
GALMADRAFT_242061 Galerina marginata GALMADRAFT_242061 N
HYDPIDRAFT_115073 Hydnomerulius pinastri HYDPIDRAFT_115073 N
JAAARDRAFT_34133 Jaapia argillacea JAAARDRAFT_34133 N
M378DRAFT_170182 Amanita muscaria M378DRAFT_170182 N
M407DRAFT_110022 Tulasnella calospora M407DRAFT_110022 N
M413DRAFT_440277 Hebeloma cylindrosporum M413DRAFT_440277 N
PAXINDRAFT_22214 Paxillus involutus PAXINDRAFT_22214 N
PAXRUDRAFT_145041 Paxillus rubicundulus PAXRUDRAFT_145041 N
PHACADRAFT_251386 Phanerochaete carnosa PHACADRAFT_251386 N
PILCRDRAFT_810626 Piloderma croceum PILCRDRAFT_810626 N
PISMIDRAFT_681565 Pisolithus microcarpus PISMIDRAFT_681565 N
PLEOSDRAFT_1110931 Pleurotus ostreatus PLEOSDRAFT_1110931 N
POSPLDRAFT_92468 Postia placenta POSPLDRAFT_92468 N
SCHCODRAFT_112222 Schizophyllum commune SCHCODRAFT_112222 N
SCHCODRAFT_232448 Schizophyllum commune SCHCODRAFT_232448 N
SERLA73DRAFT_175691 Serpula lacrymans SERLA73DRAFT_175691 N