TCP13 (Arabidopsis thaliana)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03634 (TCP) IPR005333 AT3G02150 T343686_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TCP13
M07283_2.00		 Arabidopsis thaliana
GTGGGGACCACWD
HWGTGGTCCCCAC		 Dap-seq
OMalley et al.(2016)
PTF1_col_a		 (Direct) (Direct)
TCP13
M07284_2.00		 Arabidopsis thaliana
NNBGGGACCACHN
NDGTGGTCCCVNN		 Dap-seq
OMalley et al.(2016)
PTF1_colamp_a		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TCP17
M07290_2.00 		Arabidopsis thaliana
GTGGGGACCAC
GTGGTCCCCAC		 Dap-seq
OMalley et al.(2016)
TCP17_col_a 		0.932 0.528
TCP17
M07291_2.00 		Arabidopsis thaliana
RTGGGGACCAC
GTGGTCCCCAY		 Dap-seq
OMalley et al.(2016)
TCP17_colamp_a 		0.932 0.528
PK10344.1
M01313_2.00 		Cannabis sativa
GGGACCAC
GTGGTCCC		 PBM
Lambert et al.(2019)
pTH11464 		0.917 0.556
TCP5
M02510_2.00 		Arabidopsis lyrata
GGGACCAC
GTGGTCCC		 PBM
Weirauch et al.(2014)
pTH9233 		0.903 0.491
LjT20A21.20.nc
M02519_2.00 		Lotus japonicus
GGGACCAY
RTGGTCCC		 PBM
Weirauch et al.(2014)
pTH9202 		0.897 0.491
TCP5
M02505_2.00 		Arabidopsis thaliana
GGGACCAY
RTGGTCCC		 PBM
Weirauch et al.(2014)
pTH7523 		0.897 0.491
OS01G0213800
M11398_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PCF5_01 		0.866 0.454
TCP4
M02514_2.00 		Arabidopsis lyrata
BKGGGACCAC
GTGGTCCCMV		 PBM
Weirauch et al.(2014)
pTH9313 		0.855 0.444
TCP3
M02500_2.00 		Arabidopsis thaliana
NDGGMCCACN
NGTGGKCCHN		 PBM
Weirauch et al.(2014)
pTH8835 		0.852 0.435
TCP3
M07274_2.00 		Arabidopsis thaliana
DHNGGGACCACH
DGTGGTCCCNDH		 Dap-seq
OMalley et al.(2016)
TCP3_colamp_a 		0.852 0.435
TCP3
M07275_2.00 		Arabidopsis thaliana
DNBGGGACCACHN
NDGTGGTCCCVNH		 Dap-seq
OMalley et al.(2016)
TCP3_col 		0.852 0.435
TCP4
M02501_2.00 		Arabidopsis thaliana
GGGACCAC
GTGGTCCC		 PBM
Weirauch et al.(2014)
pTH8084 		0.851 0.444
TCP2
M02503_2.00 		Arabidopsis thaliana
NBGGKMCCVN
NBGGKMCCVN		 PBM
Weirauch et al.(2014)
pTH8198 		0.844 0.435
TCP2
M02508_2.00 		Arabidopsis lyrata
GGSMCCAC
GTGGKSCC		 PBM
Weirauch et al.(2014)
pTH9231 		0.844 0.435
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AT3G02150.1 TCP 72 233
AT3G02150.2 TCP 72 233

Links

Other TCP family TFs
Other Arabidopsis thaliana TFs

422 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30068.m002661 Ricinus communis 30068.m002661 I
Bo3g028300 Brassica oleracea Bo3g028300 I
Bo4g038560 Brassica oleracea Bo4g038560 I
Bostr.3359s0141 Boechera stricta Bostr.3359s0141 I
bZIP68 Arabidopsis lyrata fgenesh2_kg.1__3350__AT1G32150.1 I
BZIP68 Arabidopsis thaliana AT1G32150 D
Cagra.3359s0011 Capsella grandiflora Cagra.3359s0011 I
cassava11837.valid.m1 Manihot esculenta cassava11837.valid.m1 I
cassava37043.valid.m1 Manihot esculenta cassava37043.valid.m1 I
Ca_11455 Cicer arietinum Ca_11455 I
Ca_15839 Cicer arietinum Ca_15839 I
chr2.LjT41P23.50.nc Lotus japonicus chr2.LjT41P23.50.nc I
Ciclev10001333m.g Citrus clementina Ciclev10001333m.g I
Cla008988 Citrullus lanatus Cla008988 I
Cla016502 Citrullus lanatus Cla016502 I
Cucsa.312800 Cucumis sativus Cucsa.312800 I
Cucsa.322110 Cucumis sativus Cucsa.322110 I
Eucgr.E00223 Eucalyptus grandis Eucgr.E00223 I
gene13716-v1.0-hybrid Fragaria vesca gene13716-v1.0-hybrid I
GLYMA09G34170 Glycine max GLYMA09G34170 I
Gorai.003G185700 Gossypium raimondii Gorai.003G185700 I
GSMUA_Achr4G04530_001 Musa acuminata GSMUA_Achr4G04530_001 I
GSMUA_Achr4G11610_001 Musa acuminata GSMUA_Achr4G11610_001 I
GSMUA_Achr5G14150_001 Musa acuminata GSMUA_Achr5G14150_001 I
LjSGA_036158.1 Lotus japonicus LjSGA_036158.1 I
MDP0000185553 Malus domestica MDP0000185553 I
MDP0000286846 Malus domestica MDP0000286846 I
mgf008195m Mimulus guttatus mgf008195m I
MTR_5g028850 Medicago truncatula MTR_5g028850 I
MTR_8g070820 Medicago truncatula MTR_8g070820 I
orange1.1g036551m.g Citrus sinensis orange1.1g036551m.g I
PDK_20s1368181g001 Phoenix dactylifera PDK_20s1368181g001 I
PDK_20s1708971g001 Phoenix dactylifera PDK_20s1708971g001 I
PGSC0003DMG400018469 Solanum tuberosum PGSC0003DMG400018469 I
PK23964.1 Cannabis sativa PK23964.1 D
POPTR_0001s01840 Populus trichocarpa POPTR_0001s01840 I
POPTR_0003s09630 Populus trichocarpa POPTR_0003s09630 I
SapurV1A.0051s0250 Salix purpurea SapurV1A.0051s0250 I
SapurV1A.0063s0130 Salix purpurea SapurV1A.0063s0130 I
Solyc08g005290.2 Solanum lycopersicum Solyc08g005290.2 I
Thhalv10007879m.g Eutrema salsugineum Thhalv10007879m.g I
VIT_02s0012g02250 Vitis vinifera VIT_02s0012g02250 I